Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10228048	0.87[CHB][hapmap]
rs10488599	0.86[CHB][hapmap]
rs1158586	0.86[CHB][hapmap]
rs1364407	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs1364409	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs1378646	0.86[CHB][hapmap]
rs1378647	0.82[CHB][hapmap]
rs1424386	1.00[CHB][hapmap];0.81[JPT][hapmap];0.94[ASN][1000 genomes]
rs1455858	0.82[CHB][hapmap]
rs2350780	1.00[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs4475425	0.91[CHB][hapmap];0.91[CHD][hapmap]
rs6467695	0.82[CHB][hapmap]
rs6945230	0.95[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs6945736	0.82[CHB][hapmap]
rs6960707	0.81[CHB][hapmap]
rs6963819	1.00[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs6969811	0.91[CHB][hapmap];0.80[ASN][1000 genomes]
rs7777727	0.91[CHB][hapmap];0.81[ASN][1000 genomes]
rs7782965	0.87[CHB][hapmap];0.91[JPT][hapmap]
rs960677	0.82[CHB][hapmap];0.86[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136558000-136609200	Weak transcription	Left Ventricle	heart
2	chr7:136565200-136575200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr7:136568200-136574200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr7:136569000-136577800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr7:136569400-136579800	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr7:136569600-136577800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr7:136570200-136577800	Weak transcription	Colon Smooth Muscle	Colon
8	chr7:136570600-136572800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr7:136570800-136577800	Weak transcription	Fetal Stomach	stomach
10	chr7:136571200-136576800	Enhancers	Fetal Heart	heart

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