Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10228048	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10242108	0.82[CHB][hapmap]
rs10488599	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10488600	0.90[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs1111418	0.81[CEU][hapmap];0.81[JPT][hapmap]
rs1364408	0.87[CHB][hapmap];0.90[JPT][hapmap]
rs1424386	0.83[CHB][hapmap]
rs1424546	0.82[CEU][hapmap];0.81[JPT][hapmap]
rs17168815	0.83[JPT][hapmap]
rs17168819	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs2350780	0.82[CHB][hapmap]
rs4475425	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6945230	0.87[CHB][hapmap]
rs6963819	0.82[CHB][hapmap]
rs6969811	0.91[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs73158705	0.87[ASN][1000 genomes]
rs73158724	0.98[ASN][1000 genomes]
rs73158732	0.84[ASN][1000 genomes]
rs7777727	0.84[CEU][hapmap];0.91[CHB][hapmap];0.84[JPT][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7806357	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs960677	0.86[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831147	chr7:136583444-136755741	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136558000-136609200	Weak transcription	Left Ventricle	heart
2	chr7:136588200-136605600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr7:136592400-136597400	Enhancers	Fetal Heart	heart
4	chr7:136595000-136602000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr7:136596400-136607200	Weak transcription	Rectal Smooth Muscle	rectum

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