Variant report

Variant	rs1364408
Chromosome Location	chr7:136611929-136611930
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10228048	0.83[CHB][hapmap];0.90[JPT][hapmap]
rs10267979	0.99[ASN][1000 genomes]
rs10488599	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs10488600	0.83[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1111418	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs1364407	0.82[CHB][hapmap]
rs1364409	0.83[CHB][hapmap]
rs1424546	0.90[JPT][hapmap]
rs17168815	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17168819	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2350782	0.85[JPT][hapmap]
rs4475425	0.84[JPT][hapmap]
rs58394792	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6943656	0.91[CEU][hapmap];0.89[JPT][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6945736	0.87[CHB][hapmap];0.90[JPT][hapmap]
rs6969811	0.90[JPT][hapmap]
rs73158732	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73158742	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73158743	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73158749	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73158750	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7777727	0.89[JPT][hapmap]
rs7782965	0.83[CHB][hapmap]
rs7806357	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs960677	0.86[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831147	chr7:136583444-136755741	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136605200-136612200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr7:136607000-136612200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr7:136607800-136638000	Weak transcription	NHLF	lung
4	chr7:136609000-136612000	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr7:136609600-136613600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr7:136610400-136612000	Enhancers	HUVEC	blood vessel
7	chr7:136610800-136612200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr7:136610800-136623400	Weak transcription	Colon Smooth Muscle	Colon
9	chr7:136611000-136616400	Weak transcription	Right Atrium	heart
10	chr7:136611000-136623200	Weak transcription	Left Ventricle	heart
11	chr7:136611600-136612200	Enhancers	Primary hematopoietic stem cells	blood
12	chr7:136611800-136614600	Enhancers	Fetal Heart	heart

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