Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10225215	0.86[CHB][hapmap];0.86[ASN][1000 genomes]
rs10228048	0.81[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap]
rs10271552	0.81[MKK][hapmap]
rs10488599	0.80[CHB][hapmap];0.81[JPT][hapmap]
rs10488600	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs1158586	0.83[CHB][hapmap];0.91[CHD][hapmap]
rs12155015	0.82[CHD][hapmap]
rs1364408	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs1378646	0.83[CHB][hapmap];0.91[CHD][hapmap]
rs1424546	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1455857	0.82[CHD][hapmap]
rs1455858	0.88[CHD][hapmap]
rs17168815	0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs17168819	0.82[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs2350782	0.95[JPT][hapmap]
rs4475425	0.81[CEU][hapmap]
rs58394792	0.81[ASN][1000 genomes]
rs6943656	0.83[CHD][hapmap];0.90[JPT][hapmap]
rs6945736	0.81[CEU][hapmap];0.81[JPT][hapmap]
rs6952499	0.92[EUR][1000 genomes]
rs6960707	0.91[CHB][hapmap];0.93[CHD][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs73158749	0.81[ASN][1000 genomes]
rs73158750	0.81[ASN][1000 genomes]
rs7806357	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs960677	0.85[JPT][hapmap];0.84[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831147	chr7:136583444-136755741	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1111418	WDR91	cis	parietal	SCAN
rs1111418	MKRN1	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136607800-136638000	Weak transcription	NHLF	lung
2	chr7:136623400-136641600	Weak transcription	Right Ventricle	heart
3	chr7:136623600-136641600	Weak transcription	Left Ventricle	heart
4	chr7:136631600-136636400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr7:136631800-136635800	Weak transcription	Colon Smooth Muscle	Colon
6	chr7:136632600-136633800	Enhancers	Right Atrium	heart
7	chr7:136633400-136635000	Weak transcription	Fetal Heart	heart
8	chr7:136633600-136633800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr7:136633600-136633800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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