Variant report

Variant	rs10271552
Chromosome Location	chr7:136624659-136624660
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10278959	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1111418	0.81[MKK][hapmap]
rs13438626	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1364402	0.92[CEU][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1364492	0.90[CEU][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17168799	0.92[CEU][hapmap];0.91[YRI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs324647	0.84[CEU][hapmap]
rs35061417	0.81[EUR][1000 genomes]
rs35345724	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36210734	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67514280	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6950254	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs71541331	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7791871	0.91[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs889934	0.92[CEU][hapmap];0.90[GIH][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831147	chr7:136583444-136755741	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv981586	chr7:136622695-136626358	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136607800-136638000	Weak transcription	NHLF	lung
2	chr7:136620600-136624800	Enhancers	Fetal Heart	heart
3	chr7:136623400-136627800	Enhancers	Colon Smooth Muscle	Colon
4	chr7:136623400-136641600	Weak transcription	Right Ventricle	heart
5	chr7:136623600-136626200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr7:136623600-136626400	Enhancers	Rectal Smooth Muscle	rectum
7	chr7:136623600-136641600	Weak transcription	Left Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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