Variant report

Variant	rs889934
Chromosome Location	chr7:136577349-136577350
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10271552	0.92[CEU][hapmap];0.90[GIH][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10278959	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13438626	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1364402	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1364492	0.89[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17168799	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs324646	0.90[CEU][hapmap]
rs324647	0.92[CEU][hapmap]
rs324648	0.88[CEU][hapmap]
rs324651	0.81[CEU][hapmap]
rs35345724	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs36210734	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs67514280	0.94[EUR][1000 genomes]
rs6950254	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71541331	0.92[EUR][1000 genomes]
rs7791871	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136558000-136609200	Weak transcription	Left Ventricle	heart
2	chr7:136569000-136577800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr7:136569400-136579800	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr7:136569600-136577800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr7:136570200-136577800	Weak transcription	Colon Smooth Muscle	Colon
6	chr7:136570800-136577800	Weak transcription	Fetal Stomach	stomach
7	chr7:136575600-136577800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr7:136576400-136577400	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr7:136576800-136578200	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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