Variant report

Variant	rs13438626
Chromosome Location	chr7:136611010-136611011
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10271552	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10278959	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1364402	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1364492	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17168799	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35061417	0.83[EUR][1000 genomes]
rs35345724	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs36210734	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs67514280	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6950254	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs71541331	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7791871	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs889934	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831147	chr7:136583444-136755741	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136605200-136612200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr7:136607000-136612200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr7:136607800-136611200	Weak transcription	Rectal Smooth Muscle	rectum
4	chr7:136607800-136638000	Weak transcription	NHLF	lung
5	chr7:136609000-136612000	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr7:136609600-136613600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr7:136610000-136611200	Enhancers	Fetal Heart	heart
8	chr7:136610400-136611600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr7:136610400-136611800	Enhancers	Stomach Smooth Muscle	stomach
10	chr7:136610400-136612000	Enhancers	HUVEC	blood vessel
11	chr7:136610600-136611800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr7:136610800-136611400	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr7:136610800-136611600	Weak transcription	Primary hematopoietic stem cells	blood
14	chr7:136610800-136612200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr7:136610800-136623400	Weak transcription	Colon Smooth Muscle	Colon
16	chr7:136611000-136616400	Weak transcription	Right Atrium	heart
17	chr7:136611000-136623200	Weak transcription	Left Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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