Variant report

Variant	rs6950254
Chromosome Location	chr7:136573736-136573737
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10271552	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10278959	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13438626	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1364402	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1364492	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17168799	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35345724	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs36210734	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs67514280	0.94[EUR][1000 genomes]
rs71541331	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7791871	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs889934	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136558000-136609200	Weak transcription	Left Ventricle	heart
2	chr7:136565200-136575200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr7:136568200-136574200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr7:136569000-136577800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr7:136569400-136579800	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr7:136569600-136577800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr7:136570200-136577800	Weak transcription	Colon Smooth Muscle	Colon
8	chr7:136570800-136577800	Weak transcription	Fetal Stomach	stomach
9	chr7:136571200-136576800	Enhancers	Fetal Heart	heart
10	chr7:136572800-136575600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links