Variant report

Variant	rs35345724
Chromosome Location	chr7:136627956-136627957
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10271552	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10278959	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13438626	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1364402	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1364492	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17168799	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35061417	0.81[EUR][1000 genomes]
rs36210734	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67514280	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6950254	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs71541331	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7791871	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs889934	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831147	chr7:136583444-136755741	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136607800-136638000	Weak transcription	NHLF	lung
2	chr7:136623400-136641600	Weak transcription	Right Ventricle	heart
3	chr7:136623600-136641600	Weak transcription	Left Ventricle	heart
4	chr7:136625400-136629000	Enhancers	Placenta Amnion	Placenta Amnion
5	chr7:136625600-136628000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr7:136625600-136628600	Enhancers	Fetal Heart	heart
7	chr7:136626000-136628200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr7:136626200-136628000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr7:136626400-136628200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr7:136626600-136628600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr7:136627200-136628000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:136627200-136628200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr7:136627600-136628000	Enhancers	H1 Cell Line	embryonic stem cell
14	chr7:136627600-136628000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr7:136627600-136628000	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr7:136627600-136628200	Enhancers	Rectal Smooth Muscle	rectum
17	chr7:136627800-136631400	Weak transcription	Colon Smooth Muscle	Colon

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links