Variant report

Variant	rs71541331
Chromosome Location	chr7:136622531-136622532
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10271552	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10278959	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13438626	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1364402	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1364492	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17168799	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35061417	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35345724	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs36210734	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs67514280	0.99[EUR][1000 genomes]
rs6950254	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7791871	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs889934	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831147	chr7:136583444-136755741	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136607800-136638000	Weak transcription	NHLF	lung
2	chr7:136610800-136623400	Weak transcription	Colon Smooth Muscle	Colon
3	chr7:136611000-136623200	Weak transcription	Left Ventricle	heart
4	chr7:136616600-136622600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr7:136620600-136624800	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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