Variant report

Variant	rs10225215
Chromosome Location	chr7:136630812-136630813
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10267979	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1111418	0.86[CHB][hapmap];0.86[ASN][1000 genomes]
rs1158586	0.87[CHB][hapmap]
rs1378646	0.87[CHB][hapmap];0.80[YRI][hapmap]
rs1378647	0.92[CHB][hapmap];0.81[YRI][hapmap];0.81[ASN][1000 genomes]
rs1424546	0.83[CHB][hapmap];0.82[ASN][1000 genomes]
rs1455858	0.91[CHB][hapmap];0.85[ASN][1000 genomes]
rs4475425	0.81[CHB][hapmap]
rs6467695	0.92[CHB][hapmap];0.83[JPT][hapmap];0.81[YRI][hapmap];0.85[ASN][1000 genomes]
rs6467696	0.87[ASN][1000 genomes]
rs6952264	0.91[YRI][hapmap]
rs6960707	0.81[CHB][hapmap];0.90[YRI][hapmap]
rs6969811	0.82[CHB][hapmap]
rs7777727	0.82[CHB][hapmap]
rs7806357	0.96[CEU][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831147	chr7:136583444-136755741	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136607800-136638000	Weak transcription	NHLF	lung
2	chr7:136623400-136641600	Weak transcription	Right Ventricle	heart
3	chr7:136623600-136641600	Weak transcription	Left Ventricle	heart
4	chr7:136627800-136631400	Weak transcription	Colon Smooth Muscle	Colon
5	chr7:136628000-136631600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr7:136629000-136631600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr7:136629600-136631200	Weak transcription	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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