Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10225215	0.81[CHB][hapmap]
rs10228048	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10242108	0.91[CHB][hapmap];0.91[CHD][hapmap]
rs10488599	0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs10488600	0.82[CHB][hapmap];0.89[JPT][hapmap]
rs1111418	0.81[CEU][hapmap]
rs1364408	0.84[JPT][hapmap]
rs1424386	0.91[CHB][hapmap]
rs1424546	0.81[CEU][hapmap]
rs17168819	0.84[JPT][hapmap]
rs2350780	0.91[CHB][hapmap];0.86[CHD][hapmap]
rs6945230	0.86[CHB][hapmap]
rs6945736	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6963819	0.91[CHB][hapmap]
rs6969811	1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs73158705	0.99[ASN][1000 genomes]
rs73158724	0.87[ASN][1000 genomes]
rs7777727	0.83[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7806357	0.84[JPT][hapmap]
rs960677	0.86[CEU][hapmap];0.91[CHB][hapmap];0.91[CHD][hapmap];0.80[GIH][hapmap];0.89[JPT][hapmap];0.81[LWK][hapmap];0.84[TSI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136558000-136609200	Weak transcription	Left Ventricle	heart
2	chr7:136565200-136575200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr7:136569000-136577800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr7:136569400-136579800	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr7:136569600-136577800	Weak transcription	Stomach Smooth Muscle	stomach
6	chr7:136570200-136577800	Weak transcription	Colon Smooth Muscle	Colon
7	chr7:136570800-136577800	Weak transcription	Fetal Stomach	stomach
8	chr7:136571200-136576800	Enhancers	Fetal Heart	heart
9	chr7:136572800-136575600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr7:136574200-136575800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr7:136574200-136576600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr7:136575000-136575200	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr7:136575000-136575600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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