Variant report

Variant	rs182582835
Chromosome Location	chr17:15536830-15536831
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492304	chr17:15043353-15611753	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv916652	chr17:15093600-15856310	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	nsv1055677	chr17:15294011-15561130	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv1059056	chr17:15294011-15856861	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
5	nsv1058286	chr17:15315763-15561130	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
6	nsv543213	chr17:15315763-15561130	Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	nsv457695	chr17:15447364-15611495	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
8	nsv574462	chr17:15447364-15611495	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
9	nsv1067123	chr17:15482503-15557728	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
10	nsv978368	chr17:15536487-15550772	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:15519600-15538400	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr17:15523000-15544000	Weak transcription	Brain Angular Gyrus	brain
3	chr17:15523000-15544200	Weak transcription	NHDF-Ad	bronchial
4	chr17:15523000-15548600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr17:15523000-15548600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr17:15523000-15548600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr17:15523000-15548800	Weak transcription	Brain Hippocampus Middle	brain
8	chr17:15523000-15548800	Weak transcription	Brain Substantia Nigra	brain
9	chr17:15523000-15548800	Weak transcription	Fetal Lung	lung
10	chr17:15523000-15551800	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr17:15524200-15548600	Weak transcription	Esophagus	oesophagus
12	chr17:15527200-15538600	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr17:15528200-15544400	Weak transcription	Psoas Muscle	Psoas
14	chr17:15529000-15549200	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr17:15529600-15553600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr17:15530000-15551800	Weak transcription	Right Ventricle	heart
17	chr17:15530000-15551800	Weak transcription	Small Intestine	intestine
18	chr17:15530200-15547400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr17:15530200-15548800	Weak transcription	Colon Smooth Muscle	Colon
20	chr17:15530200-15549000	Weak transcription	Brain Germinal Matrix	brain
21	chr17:15530200-15552000	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr17:15530200-15553800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr17:15530400-15548600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr17:15530400-15553200	Weak transcription	Spleen	Spleen
25	chr17:15530600-15548800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr17:15531400-15549200	Weak transcription	Brain Cingulate Gyrus	brain
27	chr17:15531600-15545400	Weak transcription	NHEK	skin
28	chr17:15531800-15548600	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr17:15531800-15553600	Weak transcription	Fetal Kidney	kidney
30	chr17:15532200-15546800	Weak transcription	Osteobl	bone
31	chr17:15532200-15548600	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr17:15532200-15548800	Weak transcription	Duodenum Mucosa	Duodenum
33	chr17:15532400-15545400	Weak transcription	Hela-S3	cervix
34	chr17:15532400-15554000	Weak transcription	Ovary	ovary
35	chr17:15532600-15539200	Weak transcription	Fetal Intestine Small	intestine
36	chr17:15532600-15547400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr17:15532600-15548000	Weak transcription	Gastric	stomach
38	chr17:15532600-15548600	Weak transcription	Left Ventricle	heart
39	chr17:15532600-15548800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr17:15533000-15537200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr17:15533200-15548000	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr17:15533400-15553000	Weak transcription	NHLF	lung
43	chr17:15533600-15544200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr17:15533800-15537000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr17:15533800-15538600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr17:15533800-15543000	Weak transcription	Fetal Stomach	stomach
47	chr17:15533800-15544000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr17:15533800-15545600	Weak transcription	HMEC	breast
49	chr17:15533800-15546800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr17:15533800-15547000	Weak transcription	Fetal Intestine Large	intestine

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