Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10076405	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11241809	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13187198	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1388215	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1400870	0.84[ASN][1000 genomes]
rs1400872	0.89[ASN][1000 genomes]
rs1826263	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1840978	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2056216	0.83[ASN][1000 genomes]
rs2130845	0.84[ASN][1000 genomes]
rs4407631	0.83[ASN][1000 genomes]
rs4425501	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4466164	0.84[ASN][1000 genomes]
rs4621558	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6595616	0.83[ASN][1000 genomes]
rs6862357	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6875072	0.93[ASN][1000 genomes]
rs6876182	0.86[ASN][1000 genomes]
rs724863	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs769334	0.82[ASN][1000 genomes]
rs968759	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030992	chr5:124708549-125391503	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv537892	chr5:124708549-125391503	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv882824	chr5:124789500-124875058	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124810200-124812400	Weak transcription	NHLF	lung
2	chr5:124811400-124811600	Enhancers	HUVEC	blood vessel
3	chr5:124811400-124811800	Enhancers	Fetal Heart	heart
4	chr5:124811400-124813600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr5:124811400-124814800	Enhancers	Placenta Amnion	Placenta Amnion

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