Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10076405	0.82[ASN][1000 genomes]
rs13187198	0.81[ASN][1000 genomes]
rs1388215	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1400870	0.88[ASN][1000 genomes]
rs1400872	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1491066	0.82[ASN][1000 genomes]
rs1826262	0.84[ASN][1000 genomes]
rs1826263	0.84[ASN][1000 genomes]
rs2046908	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2056216	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4407631	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4425501	0.83[ASN][1000 genomes]
rs4466164	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4621558	0.81[ASN][1000 genomes]
rs6595616	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6862357	0.92[ASN][1000 genomes]
rs6875072	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6876182	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6895537	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs724863	0.90[ASN][1000 genomes]
rs769334	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs968759	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030992	chr5:124708549-125391503	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv537892	chr5:124708549-125391503	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv882824	chr5:124789500-124875058	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124811400-124813600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr5:124811400-124814800	Enhancers	Placenta Amnion	Placenta Amnion
3	chr5:124811600-124812600	Weak transcription	HUVEC	blood vessel
4	chr5:124811600-124813000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr5:124812400-124813600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr5:124812400-124813600	Enhancers	HMEC	breast
7	chr5:124812400-124813600	Enhancers	NHLF	lung
8	chr5:124812400-124814600	Enhancers	NHEK	skin

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