Variant report

Variant	rs1827438
Chromosome Location	chr1:217359640-217359641
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1000796	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1393392	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1532716	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1875574	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6422639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6669788	0.81[ASN][1000 genomes]
rs6677242	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs905293	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv549207	chr1:217333272-217455903	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1003559	chr1:217354095-217418732	Enhancers Weak transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217358600-217361200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr1:217359000-217360600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr1:217359000-217360800	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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