Variant report

Variant	rs6669788
Chromosome Location	chr1:217365569-217365570
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1000796	0.91[ASN][1000 genomes]
rs1393392	0.86[ASN][1000 genomes]
rs1532716	0.91[ASN][1000 genomes]
rs1553351	0.84[ASN][1000 genomes]
rs1827438	0.81[ASN][1000 genomes]
rs1875574	0.91[ASN][1000 genomes]
rs6422639	0.86[ASN][1000 genomes]
rs6677242	0.91[ASN][1000 genomes]
rs905293	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv549207	chr1:217333272-217455903	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1003559	chr1:217354095-217418732	Enhancers Weak transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217365400-217366000	Weak transcription	Fetal Intestine Large	intestine

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links