Variant report

Variant	rs1827888
Chromosome Location	chr4:97183336-97183337
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11097501	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13121458	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13122821	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13122856	0.86[EUR][1000 genomes]
rs1373331	0.82[EUR][1000 genomes]
rs1444021	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1506317	0.83[EUR][1000 genomes]
rs1506320	0.83[EUR][1000 genomes]
rs1506321	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1567036	0.85[EUR][1000 genomes]
rs1834360	0.81[EUR][1000 genomes]
rs1847968	0.85[EUR][1000 genomes]
rs1867400	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1911074	0.84[EUR][1000 genomes]
rs2197322	0.86[EUR][1000 genomes]
rs2865736	0.84[EUR][1000 genomes]
rs4611939	0.84[EUR][1000 genomes]
rs4613576	0.84[EUR][1000 genomes]
rs4699501	0.84[EUR][1000 genomes]
rs6815743	0.86[EUR][1000 genomes]
rs6826817	0.81[EUR][1000 genomes]
rs6841294	0.84[EUR][1000 genomes]
rs6855768	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830013	chr4:97033125-97204291	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1003868	chr4:97068155-97222544	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv470057	chr4:97104880-97311657	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv461589	chr4:97104881-97311657	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv594916	chr4:97104881-97311657	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv879631	chr4:97114706-97263153	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv879632	chr4:97118539-97308914	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv879633	chr4:97125086-97263153	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv2763381	chr4:97140746-97193871	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:97181000-97184200	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr4:97181600-97185000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:97182000-97185000	Weak transcription	Fetal Intestine Large	intestine
4	chr4:97182400-97183400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr4:97182400-97183600	Enhancers	Stomach Mucosa	stomach
6	chr4:97182600-97186600	Weak transcription	Fetal Brain Male	brain
7	chr4:97183000-97184000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr4:97183200-97183600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr4:97183200-97183600	Enhancers	Gastric	stomach
10	chr4:97183200-97183800	Enhancers	H9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links