Variant report

Variant	rs6855768
Chromosome Location	chr4:97294527-97294528
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 146 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:142)

rs_ID	r²[population]
rs10002816	0.87[ASN][1000 genomes]
rs10006557	0.87[ASN][1000 genomes]
rs10007900	0.89[ASN][1000 genomes]
rs10009386	0.89[EUR][1000 genomes]
rs10010700	0.88[EUR][1000 genomes]
rs10015613	0.87[ASN][1000 genomes]
rs10021889	0.91[ASN][1000 genomes]
rs10032960	0.86[EUR][1000 genomes]
rs10213429	0.89[ASN][1000 genomes]
rs11097501	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11097502	0.89[ASN][1000 genomes]
rs11097505	0.92[ASN][1000 genomes]
rs11932562	0.89[EUR][1000 genomes]
rs11935830	0.88[ASN][1000 genomes]
rs12501360	0.86[ASN][1000 genomes]
rs12508802	0.87[ASN][1000 genomes]
rs12509883	0.89[ASN][1000 genomes]
rs12650441	0.86[ASN][1000 genomes]
rs13102896	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13104802	0.93[ASN][1000 genomes]
rs13121458	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13122821	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13122856	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13139267	0.89[EUR][1000 genomes]
rs13150508	0.92[ASN][1000 genomes]
rs1354704	0.93[ASN][1000 genomes]
rs1354706	0.93[ASN][1000 genomes]
rs1373331	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1395199	0.86[ASN][1000 genomes]
rs1400340	0.86[EUR][1000 genomes]
rs1425361	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1444021	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1506304	0.92[ASN][1000 genomes]
rs1506305	0.92[ASN][1000 genomes]
rs1506306	0.92[ASN][1000 genomes]
rs1506317	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1506318	0.87[ASN][1000 genomes]
rs1506319	0.92[ASN][1000 genomes]
rs1506320	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1506321	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1516671	0.88[EUR][1000 genomes]
rs1516673	0.89[EUR][1000 genomes]
rs1567036	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1605227	0.91[ASN][1000 genomes]
rs17025493	0.85[ASN][1000 genomes]
rs1827888	0.83[EUR][1000 genomes]
rs1834360	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1847963	0.86[ASN][1000 genomes]
rs1847964	0.81[ASN][1000 genomes]
rs1847967	0.87[ASN][1000 genomes]
rs1847968	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1847969	0.89[ASN][1000 genomes]
rs1857889	0.86[ASN][1000 genomes]
rs1857890	0.90[ASN][1000 genomes]
rs1867400	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1911074	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1911076	0.92[ASN][1000 genomes]
rs1911077	0.91[ASN][1000 genomes]
rs1948912	0.84[ASN][1000 genomes]
rs2048022	0.89[ASN][1000 genomes]
rs2083922	0.87[ASN][1000 genomes]
rs2102786	0.89[EUR][1000 genomes]
rs2174584	0.93[ASN][1000 genomes]
rs2197322	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2203630	0.87[EUR][1000 genomes]
rs28407945	0.92[ASN][1000 genomes]
rs28523416	0.92[ASN][1000 genomes]
rs28565871	0.92[ASN][1000 genomes]
rs28633781	0.86[ASN][1000 genomes]
rs2865736	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28788633	0.89[ASN][1000 genomes]
rs35257138	0.92[ASN][1000 genomes]
rs36039803	0.87[ASN][1000 genomes]
rs4146410	0.84[ASN][1000 genomes]
rs4146411	0.84[ASN][1000 genomes]
rs4235424	0.87[EUR][1000 genomes]
rs4289448	0.89[EUR][1000 genomes]
rs4414959	0.86[ASN][1000 genomes]
rs4611939	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4613576	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4619895	0.92[ASN][1000 genomes]
rs4699283	0.84[ASN][1000 genomes]
rs4699285	0.89[ASN][1000 genomes]
rs4699287	0.90[ASN][1000 genomes]
rs4699288	0.89[ASN][1000 genomes]
rs4699496	0.84[ASN][1000 genomes]
rs4699501	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4699503	0.85[ASN][1000 genomes]
rs4699512	0.89[ASN][1000 genomes]
rs4699513	0.89[ASN][1000 genomes]
rs4699522	0.88[EUR][1000 genomes]
rs4699523	0.86[EUR][1000 genomes]
rs5017329	0.87[ASN][1000 genomes]
rs5017345	0.89[EUR][1000 genomes]
rs55680326	0.81[ASN][1000 genomes]
rs6419138	0.84[EUR][1000 genomes]
rs6532600	0.89[ASN][1000 genomes]
rs6532607	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6532611	0.89[EUR][1000 genomes]
rs6532613	0.88[EUR][1000 genomes]
rs6532614	0.88[EUR][1000 genomes]
rs6532621	0.89[EUR][1000 genomes]
rs6815558	0.89[ASN][1000 genomes]
rs6815743	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6816447	0.92[ASN][1000 genomes]
rs6826365	0.88[EUR][1000 genomes]
rs6826478	0.88[EUR][1000 genomes]
rs6826817	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6830120	0.93[ASN][1000 genomes]
rs6831693	0.89[EUR][1000 genomes]
rs6831867	0.89[EUR][1000 genomes]
rs6832934	0.92[ASN][1000 genomes]
rs6835808	0.86[ASN][1000 genomes]
rs6836315	0.89[EUR][1000 genomes]
rs6837318	0.89[ASN][1000 genomes]
rs6841294	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6857113	0.89[ASN][1000 genomes]
rs72883800	0.84[ASN][1000 genomes]
rs72885446	0.85[ASN][1000 genomes]
rs7435962	0.89[EUR][1000 genomes]
rs7653937	0.86[ASN][1000 genomes]
rs766061	0.86[ASN][1000 genomes]
rs7664054	0.89[EUR][1000 genomes]
rs7664279	0.84[EUR][1000 genomes]
rs7671604	0.86[ASN][1000 genomes]
rs7673756	0.93[ASN][1000 genomes]
rs7677339	0.89[EUR][1000 genomes]
rs7677553	0.89[EUR][1000 genomes]
rs7686174	0.93[ASN][1000 genomes]
rs7688727	0.89[EUR][1000 genomes]
rs7690397	0.88[ASN][1000 genomes]
rs9307167	0.89[ASN][1000 genomes]
rs9307168	0.89[ASN][1000 genomes]
rs931841	0.92[ASN][1000 genomes]
rs931842	0.92[ASN][1000 genomes]
rs938547	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs938548	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9683832	0.89[EUR][1000 genomes]
rs9884259	0.89[ASN][1000 genomes]
rs9884940	0.89[ASN][1000 genomes]
rs9998383	0.92[ASN][1000 genomes]
rs9999006	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470057	chr4:97104880-97311657	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv461589	chr4:97104881-97311657	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv594916	chr4:97104881-97311657	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv879632	chr4:97118539-97308914	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:97292000-97296000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links