Variant report

Variant	rs6532607
Chromosome Location	chr4:97392005-97392006
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10009386	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10010700	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10032960	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11932562	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13102896	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13139267	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1400340	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1516671	0.88[EUR][1000 genomes]
rs1516673	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2102786	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2203630	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4235424	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4289448	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4699288	0.81[ASN][1000 genomes]
rs4699512	0.81[ASN][1000 genomes]
rs4699513	0.81[ASN][1000 genomes]
rs4699522	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4699523	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs5017345	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6419138	0.85[EUR][1000 genomes]
rs6532611	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6532613	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6532614	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6532621	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6826365	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6826478	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6831693	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6831867	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6836315	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6855768	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7435962	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7664054	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7664279	0.85[EUR][1000 genomes]
rs7677339	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7677553	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7688727	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs938547	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs938548	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9683832	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011487	chr4:97301762-97393803	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1009685	chr4:97308301-97392056	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv879634	chr4:97371381-97727113	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv879635	chr4:97389090-97591085	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:97391600-97392800	Enhancers	Stomach Mucosa	stomach

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