Variant report

Variant	rs938548
Chromosome Location	chr4:97394807-97394808
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 106 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs10007900	0.80[ASN][1000 genomes]
rs10009386	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10010700	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10016180	0.90[CHB][hapmap];0.87[JPT][hapmap]
rs10021889	0.82[ASN][1000 genomes]
rs10032960	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10213429	0.80[ASN][1000 genomes]
rs11097501	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11097502	0.80[ASN][1000 genomes]
rs11097505	0.83[ASN][1000 genomes]
rs11932562	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11935830	0.87[ASN][1000 genomes]
rs13102896	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13104802	0.84[ASN][1000 genomes]
rs13121458	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13122821	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13122856	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13139267	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13150508	0.83[ASN][1000 genomes]
rs1354704	0.84[ASN][1000 genomes]
rs1354706	0.84[ASN][1000 genomes]
rs1400340	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1444021	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1506304	0.83[ASN][1000 genomes]
rs1506305	0.83[ASN][1000 genomes]
rs1506306	0.83[ASN][1000 genomes]
rs1506317	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1506319	0.83[ASN][1000 genomes]
rs1506320	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1506321	0.81[ASN][1000 genomes]
rs1516671	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1516673	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1567036	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1605227	0.82[ASN][1000 genomes]
rs1847968	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1847969	0.88[CHB][hapmap];0.84[JPT][hapmap];0.80[ASN][1000 genomes]
rs1867400	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1911074	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1911076	0.83[ASN][1000 genomes]
rs1911077	0.82[ASN][1000 genomes]
rs2048022	0.80[ASN][1000 genomes]
rs2102786	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2174584	0.84[ASN][1000 genomes]
rs2197322	0.93[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2203630	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28407945	0.83[ASN][1000 genomes]
rs28523416	0.83[ASN][1000 genomes]
rs28565871	0.83[ASN][1000 genomes]
rs2865736	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28788633	0.80[ASN][1000 genomes]
rs34198564	0.85[ASN][1000 genomes]
rs35257138	0.83[ASN][1000 genomes]
rs4235424	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4289448	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4611939	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4613576	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4619895	0.83[ASN][1000 genomes]
rs4699285	0.80[ASN][1000 genomes]
rs4699287	0.81[ASN][1000 genomes]
rs4699288	0.88[ASN][1000 genomes]
rs4699501	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4699512	0.88[ASN][1000 genomes]
rs4699513	0.88[ASN][1000 genomes]
rs4699522	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4699523	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs5017345	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58334182	0.82[ASN][1000 genomes]
rs6419138	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6532607	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6532611	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6532613	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6532614	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6532621	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6815743	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6816447	0.83[ASN][1000 genomes]
rs6826365	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6826478	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6830120	0.84[ASN][1000 genomes]
rs6831693	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6831867	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6832934	0.83[ASN][1000 genomes]
rs6836315	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6841294	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6855768	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72885485	0.83[ASN][1000 genomes]
rs7435962	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7664054	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7664279	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7673756	0.84[ASN][1000 genomes]
rs7677339	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7677553	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7686174	0.84[ASN][1000 genomes]
rs7688727	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7698381	0.85[ASN][1000 genomes]
rs9307168	0.80[ASN][1000 genomes]
rs931841	0.83[ASN][1000 genomes]
rs931842	0.83[ASN][1000 genomes]
rs938547	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9683832	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9884259	0.94[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs9884940	0.80[ASN][1000 genomes]
rs9998383	0.83[ASN][1000 genomes]
rs9999006	0.90[CHB][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879634	chr4:97371381-97727113	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv879635	chr4:97389090-97591085	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1007650	chr4:97393803-97485770	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:97393600-97395000	Enhancers	Stomach Mucosa	stomach
2	chr4:97393800-97395000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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