Variant report

Variant	rs34198564
Chromosome Location	chr4:97394501-97394502
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10012312	0.81[ASN][1000 genomes]
rs10012487	0.85[ASN][1000 genomes]
rs10016180	0.95[JPT][hapmap]
rs10018197	0.85[ASN][1000 genomes]
rs10022608	0.85[ASN][1000 genomes]
rs10032944	0.81[ASN][1000 genomes]
rs11097514	0.87[ASN][1000 genomes]
rs11932384	0.81[ASN][1000 genomes]
rs11935830	0.84[ASN][1000 genomes]
rs11946434	0.84[EUR][1000 genomes]
rs11946551	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12639647	0.85[ASN][1000 genomes]
rs12640599	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12642471	0.83[ASN][1000 genomes]
rs12644982	0.81[ASN][1000 genomes]
rs12645609	0.87[ASN][1000 genomes]
rs12645669	0.87[ASN][1000 genomes]
rs12646509	0.85[ASN][1000 genomes]
rs13102896	0.83[ASN][1000 genomes]
rs1354704	0.81[ASN][1000 genomes]
rs1354706	0.81[ASN][1000 genomes]
rs1400341	0.85[ASN][1000 genomes]
rs1516670	0.85[ASN][1000 genomes]
rs1516672	0.85[ASN][1000 genomes]
rs1516676	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1588981	0.87[ASN][1000 genomes]
rs1605227	0.81[ASN][1000 genomes]
rs17025493	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1847964	0.86[ASN][1000 genomes]
rs1847966	0.81[ASN][1000 genomes]
rs1847969	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs1948912	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2090376	0.85[ASN][1000 genomes]
rs2090377	0.87[ASN][1000 genomes]
rs2113973	0.81[ASN][1000 genomes]
rs2174584	0.81[ASN][1000 genomes]
rs2197322	0.82[JPT][hapmap]
rs2203629	0.87[ASN][1000 genomes]
rs2203631	0.86[ASN][1000 genomes]
rs28409524	0.85[ASN][1000 genomes]
rs4146410	0.89[ASN][1000 genomes]
rs4146411	0.89[ASN][1000 genomes]
rs4299674	0.87[ASN][1000 genomes]
rs4343731	0.83[ASN][1000 genomes]
rs4699288	0.85[ASN][1000 genomes]
rs4699503	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4699512	0.85[ASN][1000 genomes]
rs4699513	0.85[ASN][1000 genomes]
rs4699524	0.86[ASN][1000 genomes]
rs55680326	0.85[ASN][1000 genomes]
rs57499976	0.87[ASN][1000 genomes]
rs58334182	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59070882	0.87[ASN][1000 genomes]
rs60275360	0.83[ASN][1000 genomes]
rs6532615	0.87[ASN][1000 genomes]
rs6532622	0.85[ASN][1000 genomes]
rs6532623	0.85[ASN][1000 genomes]
rs6532626	0.81[ASN][1000 genomes]
rs6820075	0.83[ASN][1000 genomes]
rs6826069	0.87[ASN][1000 genomes]
rs6827340	0.86[ASN][1000 genomes]
rs6829988	0.84[ASN][1000 genomes]
rs6830120	0.81[ASN][1000 genomes]
rs6838629	0.86[ASN][1000 genomes]
rs6852663	0.87[ASN][1000 genomes]
rs6855505	0.84[ASN][1000 genomes]
rs6856143	0.84[ASN][1000 genomes]
rs72883800	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72885446	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72885485	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7654868	0.81[ASN][1000 genomes]
rs7664207	0.87[ASN][1000 genomes]
rs7667137	0.85[ASN][1000 genomes]
rs7670117	0.81[ASN][1000 genomes]
rs7671980	0.81[ASN][1000 genomes]
rs7673756	0.81[ASN][1000 genomes]
rs7684850	0.81[ASN][1000 genomes]
rs7686174	0.81[ASN][1000 genomes]
rs7688060	0.85[ASN][1000 genomes]
rs7698381	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs938547	0.85[ASN][1000 genomes]
rs938548	0.85[ASN][1000 genomes]
rs9884259	0.95[JPT][hapmap]
rs9993653	0.86[ASN][1000 genomes]
rs9999006	0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879634	chr4:97371381-97727113	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv879635	chr4:97389090-97591085	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1007650	chr4:97393803-97485770	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:97393600-97395000	Enhancers	Stomach Mucosa	stomach
2	chr4:97393800-97395000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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