Variant report

Variant	rs11946551
Chromosome Location	chr4:97440782-97440783
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10009386	0.86[ASN][1000 genomes]
rs10010700	0.82[ASN][1000 genomes]
rs10012312	0.96[ASN][1000 genomes]
rs10012487	1.00[ASN][1000 genomes]
rs10018197	1.00[ASN][1000 genomes]
rs10022608	1.00[ASN][1000 genomes]
rs10032944	0.93[ASN][1000 genomes]
rs10032960	0.82[ASN][1000 genomes]
rs11097514	0.98[ASN][1000 genomes]
rs11932562	0.85[ASN][1000 genomes]
rs11946434	0.87[EUR][1000 genomes]
rs12639647	1.00[ASN][1000 genomes]
rs12640599	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12645609	0.98[ASN][1000 genomes]
rs12645669	0.98[ASN][1000 genomes]
rs12646509	0.97[ASN][1000 genomes]
rs13139267	0.86[ASN][1000 genomes]
rs1400340	0.81[ASN][1000 genomes]
rs1400341	1.00[ASN][1000 genomes]
rs1516670	1.00[ASN][1000 genomes]
rs1516671	0.86[ASN][1000 genomes]
rs1516672	1.00[ASN][1000 genomes]
rs1516673	0.85[ASN][1000 genomes]
rs1516676	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1588981	0.98[ASN][1000 genomes]
rs17025493	0.87[EUR][1000 genomes]
rs2090376	1.00[ASN][1000 genomes]
rs2090377	0.98[ASN][1000 genomes]
rs2102786	0.86[ASN][1000 genomes]
rs2203629	0.98[ASN][1000 genomes]
rs2203630	0.86[ASN][1000 genomes]
rs2203631	0.98[ASN][1000 genomes]
rs28409524	1.00[ASN][1000 genomes]
rs34198564	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4235424	0.86[ASN][1000 genomes]
rs4289448	0.86[ASN][1000 genomes]
rs4299674	0.98[ASN][1000 genomes]
rs4699503	0.87[EUR][1000 genomes]
rs4699522	0.84[ASN][1000 genomes]
rs4699523	0.84[ASN][1000 genomes]
rs4699524	0.98[ASN][1000 genomes]
rs5017345	0.86[ASN][1000 genomes]
rs57499976	0.98[ASN][1000 genomes]
rs58334182	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59070882	0.98[ASN][1000 genomes]
rs6419138	0.84[ASN][1000 genomes]
rs6532611	0.86[ASN][1000 genomes]
rs6532613	0.86[ASN][1000 genomes]
rs6532614	0.86[ASN][1000 genomes]
rs6532615	0.98[ASN][1000 genomes]
rs6532621	0.86[ASN][1000 genomes]
rs6532622	1.00[ASN][1000 genomes]
rs6532623	1.00[ASN][1000 genomes]
rs6532626	0.96[ASN][1000 genomes]
rs6826069	0.98[ASN][1000 genomes]
rs6826365	0.86[ASN][1000 genomes]
rs6826478	0.86[ASN][1000 genomes]
rs6827340	0.98[ASN][1000 genomes]
rs6829988	0.98[ASN][1000 genomes]
rs6831693	0.86[ASN][1000 genomes]
rs6831867	0.86[ASN][1000 genomes]
rs6836315	0.86[ASN][1000 genomes]
rs6838629	0.98[ASN][1000 genomes]
rs6852663	0.98[ASN][1000 genomes]
rs6855505	0.98[ASN][1000 genomes]
rs6856143	0.98[ASN][1000 genomes]
rs72885446	0.87[EUR][1000 genomes]
rs72885485	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7435962	0.85[ASN][1000 genomes]
rs7654868	0.96[ASN][1000 genomes]
rs7664054	0.86[ASN][1000 genomes]
rs7664207	0.98[ASN][1000 genomes]
rs7664279	0.84[ASN][1000 genomes]
rs7667137	1.00[ASN][1000 genomes]
rs7670117	0.96[ASN][1000 genomes]
rs7671980	0.96[ASN][1000 genomes]
rs7677339	0.86[ASN][1000 genomes]
rs7677553	0.86[ASN][1000 genomes]
rs7684850	0.96[ASN][1000 genomes]
rs7688060	1.00[ASN][1000 genomes]
rs7688727	0.86[ASN][1000 genomes]
rs7698381	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9683832	0.86[ASN][1000 genomes]
rs9993653	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879634	chr4:97371381-97727113	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv879635	chr4:97389090-97591085	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1007650	chr4:97393803-97485770	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:97440200-97441000	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr4:97440400-97441200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr4:97440600-97442400	Enhancers	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links