Variant report

Variant	rs5017345
Chromosome Location	chr4:97427972-97427973
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs10009386	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10010700	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10012312	0.82[ASN][1000 genomes]
rs10012487	0.86[ASN][1000 genomes]
rs10018197	0.86[ASN][1000 genomes]
rs10022608	0.86[ASN][1000 genomes]
rs10032944	0.92[ASN][1000 genomes]
rs10032960	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11097514	0.86[ASN][1000 genomes]
rs11932562	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11946551	0.86[ASN][1000 genomes]
rs12639647	0.86[ASN][1000 genomes]
rs12640599	0.86[ASN][1000 genomes]
rs12645609	0.86[ASN][1000 genomes]
rs12645669	0.86[ASN][1000 genomes]
rs12646509	0.84[ASN][1000 genomes]
rs13102896	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13139267	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1400340	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1400341	0.86[ASN][1000 genomes]
rs1506317	0.83[EUR][1000 genomes]
rs1506320	0.87[EUR][1000 genomes]
rs1516670	0.86[ASN][1000 genomes]
rs1516671	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1516672	0.86[ASN][1000 genomes]
rs1516673	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1516676	0.82[ASN][1000 genomes]
rs1567036	0.85[EUR][1000 genomes]
rs1588981	0.86[ASN][1000 genomes]
rs1847968	0.85[EUR][1000 genomes]
rs1847969	0.80[JPT][hapmap]
rs1911074	0.86[EUR][1000 genomes]
rs2090376	0.86[ASN][1000 genomes]
rs2090377	0.86[ASN][1000 genomes]
rs2102786	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2197322	0.96[CEU][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes]
rs2203629	0.86[ASN][1000 genomes]
rs2203630	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2203631	0.85[ASN][1000 genomes]
rs28409524	0.86[ASN][1000 genomes]
rs2865736	0.86[EUR][1000 genomes]
rs4235424	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4289448	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4299674	0.86[ASN][1000 genomes]
rs4611939	0.86[EUR][1000 genomes]
rs4613576	0.86[EUR][1000 genomes]
rs4699501	0.86[EUR][1000 genomes]
rs4699522	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4699523	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4699524	0.85[ASN][1000 genomes]
rs57499976	0.86[ASN][1000 genomes]
rs59070882	0.86[ASN][1000 genomes]
rs6419138	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6532607	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6532611	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6532613	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6532614	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6532615	0.86[ASN][1000 genomes]
rs6532621	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6532622	0.86[ASN][1000 genomes]
rs6532623	0.86[ASN][1000 genomes]
rs6532626	0.82[ASN][1000 genomes]
rs6815743	0.84[EUR][1000 genomes]
rs6826069	0.86[ASN][1000 genomes]
rs6826365	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6826478	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6827340	0.85[ASN][1000 genomes]
rs6829988	0.84[ASN][1000 genomes]
rs6831693	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6831867	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6836315	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6838629	0.85[ASN][1000 genomes]
rs6841294	0.86[EUR][1000 genomes]
rs6852663	0.86[ASN][1000 genomes]
rs6855505	0.84[ASN][1000 genomes]
rs6855768	0.89[EUR][1000 genomes]
rs6856143	0.84[ASN][1000 genomes]
rs7435962	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7654868	0.81[ASN][1000 genomes]
rs7662754	0.81[ASN][1000 genomes]
rs7664054	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7664207	0.86[ASN][1000 genomes]
rs7664279	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7667137	0.86[ASN][1000 genomes]
rs7670117	0.82[ASN][1000 genomes]
rs7671980	0.82[ASN][1000 genomes]
rs7677339	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7677553	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7684850	0.82[ASN][1000 genomes]
rs7688060	0.86[ASN][1000 genomes]
rs7688727	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs938547	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs938548	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9683832	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9884259	0.82[JPT][hapmap]
rs9993653	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879634	chr4:97371381-97727113	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv879635	chr4:97389090-97591085	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1007650	chr4:97393803-97485770	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:97427400-97430000	Enhancers	Dnd41	blood

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