Variant report
| Variant | rs7662754 |
|---|---|
| Chromosome Location | chr4:97463888-97463889 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs10009386 | 0.83[ASN][1000 genomes] |
| rs11932562 | 0.82[ASN][1000 genomes] |
| rs13139267 | 0.83[ASN][1000 genomes] |
| rs1516666 | 0.90[AFR][1000 genomes] |
| rs1516671 | 0.83[ASN][1000 genomes] |
| rs1516673 | 0.82[ASN][1000 genomes] |
| rs1949363 | 0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2102786 | 0.83[ASN][1000 genomes] |
| rs2203630 | 0.81[ASN][1000 genomes] |
| rs4235424 | 0.81[ASN][1000 genomes] |
| rs4289448 | 0.83[ASN][1000 genomes] |
| rs4699522 | 0.81[ASN][1000 genomes] |
| rs4699523 | 0.81[ASN][1000 genomes] |
| rs5017345 | 0.81[ASN][1000 genomes] |
| rs6419138 | 0.84[ASN][1000 genomes] |
| rs6532611 | 0.81[ASN][1000 genomes] |
| rs6532613 | 0.83[ASN][1000 genomes] |
| rs6532614 | 0.83[ASN][1000 genomes] |
| rs6532621 | 0.83[ASN][1000 genomes] |
| rs6826365 | 0.83[ASN][1000 genomes] |
| rs6826478 | 0.81[ASN][1000 genomes] |
| rs6831693 | 0.83[ASN][1000 genomes] |
| rs6831867 | 0.83[ASN][1000 genomes] |
| rs6836315 | 0.83[ASN][1000 genomes] |
| rs7435962 | 0.81[ASN][1000 genomes] |
| rs7664054 | 0.81[ASN][1000 genomes] |
| rs7664279 | 0.84[ASN][1000 genomes] |
| rs7677339 | 0.81[ASN][1000 genomes] |
| rs7677553 | 0.81[ASN][1000 genomes] |
| rs7688727 | 0.81[ASN][1000 genomes] |
| rs9683832 | 0.83[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv879634 | chr4:97371381-97727113 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 2 | nsv879635 | chr4:97389090-97591085 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 3 | nsv1007650 | chr4:97393803-97485770 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:97463600-97464200 | Enhancers | Brain Cingulate Gyrus | brain |
| 2 | chr4:97463600-97465200 | Enhancers | Brain Substantia Nigra | brain |
| 3 | chr4:97463600-97465600 | Enhancers | Brain Hippocampus Middle | brain |
