Variant report
| Variant | rs1949363 |
|---|---|
| Chromosome Location | chr4:97491654-97491655 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:97490329..97491913-chr4:97493450..97495656,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs10009386 | 0.81[ASN][1000 genomes] |
| rs11932562 | 0.80[ASN][1000 genomes] |
| rs13139267 | 0.81[ASN][1000 genomes] |
| rs1516666 | 0.92[AFR][1000 genomes] |
| rs1516671 | 0.81[ASN][1000 genomes] |
| rs1516673 | 0.80[ASN][1000 genomes] |
| rs2102786 | 0.81[ASN][1000 genomes] |
| rs4289448 | 0.81[ASN][1000 genomes] |
| rs6419138 | 0.82[ASN][1000 genomes] |
| rs6532613 | 0.81[ASN][1000 genomes] |
| rs6532614 | 0.81[ASN][1000 genomes] |
| rs6532621 | 0.81[ASN][1000 genomes] |
| rs6826365 | 0.81[ASN][1000 genomes] |
| rs6831693 | 0.81[ASN][1000 genomes] |
| rs6831867 | 0.81[ASN][1000 genomes] |
| rs6836315 | 0.81[ASN][1000 genomes] |
| rs7662754 | 0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7664279 | 0.82[ASN][1000 genomes] |
| rs9683832 | 0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv879634 | chr4:97371381-97727113 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 2 | nsv879635 | chr4:97389090-97591085 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:97486000-97505000 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
