Variant report

Variant	rs17025493
Chromosome Location	chr4:97310536-97310537
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:97309756..97312086-chr4:97312168..97315056,2	MCF-7	breast:

Extended variants
information (count: 131 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:126)

rs_ID	r²[population]
rs10002816	0.83[ASN][1000 genomes]
rs10006557	0.84[ASN][1000 genomes]
rs10007900	0.87[ASN][1000 genomes]
rs10015613	0.84[ASN][1000 genomes]
rs10016180	0.95[JPT][hapmap]
rs10021889	0.88[ASN][1000 genomes]
rs10213429	0.87[ASN][1000 genomes]
rs11097502	0.87[ASN][1000 genomes]
rs11097505	0.89[ASN][1000 genomes]
rs11097514	0.80[ASN][1000 genomes]
rs11932384	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11935830	0.85[ASN][1000 genomes]
rs11946551	0.87[EUR][1000 genomes]
rs12501360	0.82[ASN][1000 genomes]
rs12508802	0.83[ASN][1000 genomes]
rs12509883	0.85[ASN][1000 genomes]
rs12640599	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12642471	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12644982	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12645609	0.80[ASN][1000 genomes]
rs12645669	0.80[ASN][1000 genomes]
rs12650441	0.82[ASN][1000 genomes]
rs13104802	0.88[ASN][1000 genomes]
rs13150508	0.89[ASN][1000 genomes]
rs1354704	0.91[ASN][1000 genomes]
rs1354706	0.91[ASN][1000 genomes]
rs1395199	0.82[ASN][1000 genomes]
rs1506304	0.89[ASN][1000 genomes]
rs1506305	0.89[ASN][1000 genomes]
rs1506306	0.89[ASN][1000 genomes]
rs1506317	0.81[ASN][1000 genomes]
rs1506318	0.83[ASN][1000 genomes]
rs1506319	0.89[ASN][1000 genomes]
rs1506320	0.84[ASN][1000 genomes]
rs1516676	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1567036	0.82[ASN][1000 genomes]
rs1588981	0.80[ASN][1000 genomes]
rs1605227	0.91[ASN][1000 genomes]
rs17025209	0.86[AMR][1000 genomes]
rs1847963	0.82[ASN][1000 genomes]
rs1847964	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1847966	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1847967	0.83[ASN][1000 genomes]
rs1847969	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1857889	0.82[ASN][1000 genomes]
rs1911074	0.84[ASN][1000 genomes]
rs1911076	0.89[ASN][1000 genomes]
rs1911077	0.89[ASN][1000 genomes]
rs1948912	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2048022	0.87[ASN][1000 genomes]
rs2083922	0.83[ASN][1000 genomes]
rs2090377	0.80[ASN][1000 genomes]
rs2113973	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2174584	0.91[ASN][1000 genomes]
rs2197322	0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs2203629	0.80[ASN][1000 genomes]
rs28407945	0.89[ASN][1000 genomes]
rs28523416	0.89[ASN][1000 genomes]
rs28565871	0.89[ASN][1000 genomes]
rs28633781	0.82[ASN][1000 genomes]
rs2865736	0.84[ASN][1000 genomes]
rs28788633	0.87[ASN][1000 genomes]
rs34198564	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35257138	0.90[ASN][1000 genomes]
rs36039803	0.83[ASN][1000 genomes]
rs4146410	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4146411	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4293790	0.86[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs4299674	0.80[ASN][1000 genomes]
rs4343731	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4414959	0.82[ASN][1000 genomes]
rs4611939	0.84[ASN][1000 genomes]
rs4613576	0.84[ASN][1000 genomes]
rs4619895	0.89[ASN][1000 genomes]
rs4699283	0.84[ASN][1000 genomes]
rs4699285	0.87[ASN][1000 genomes]
rs4699287	0.88[ASN][1000 genomes]
rs4699288	0.87[ASN][1000 genomes]
rs4699496	0.84[ASN][1000 genomes]
rs4699501	0.84[ASN][1000 genomes]
rs4699503	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4699512	0.87[ASN][1000 genomes]
rs4699513	0.87[ASN][1000 genomes]
rs5017329	0.83[ASN][1000 genomes]
rs55680326	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs55847611	0.80[AMR][1000 genomes]
rs57499976	0.80[ASN][1000 genomes]
rs58334182	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59070882	0.80[ASN][1000 genomes]
rs60275360	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6532600	0.85[ASN][1000 genomes]
rs6532615	0.80[ASN][1000 genomes]
rs6815558	0.85[ASN][1000 genomes]
rs6815743	0.81[ASN][1000 genomes]
rs6816447	0.89[ASN][1000 genomes]
rs6820075	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6826069	0.80[ASN][1000 genomes]
rs6830120	0.91[ASN][1000 genomes]
rs6832934	0.89[ASN][1000 genomes]
rs6835808	0.83[ASN][1000 genomes]
rs6837318	0.85[ASN][1000 genomes]
rs6841294	0.84[ASN][1000 genomes]
rs6852663	0.80[ASN][1000 genomes]
rs6855768	0.85[ASN][1000 genomes]
rs6857113	0.85[ASN][1000 genomes]
rs72880179	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs72880182	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs72883800	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs72885446	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72885485	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7653937	0.82[ASN][1000 genomes]
rs766061	0.82[ASN][1000 genomes]
rs7664207	0.80[ASN][1000 genomes]
rs7671604	0.82[ASN][1000 genomes]
rs7673756	0.91[ASN][1000 genomes]
rs7686174	0.91[ASN][1000 genomes]
rs7690397	0.84[ASN][1000 genomes]
rs7698381	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9307167	0.85[ASN][1000 genomes]
rs9307168	0.87[ASN][1000 genomes]
rs931841	0.89[ASN][1000 genomes]
rs931842	0.89[ASN][1000 genomes]
rs9884259	0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs9884940	0.87[ASN][1000 genomes]
rs9998383	0.89[ASN][1000 genomes]
rs9999006	0.95[JPT][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470057	chr4:97104880-97311657	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv461589	chr4:97104881-97311657	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv594916	chr4:97104881-97311657	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1011487	chr4:97301762-97393803	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1009685	chr4:97308301-97392056	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:97310400-97312200	Enhancers	Dnd41	blood

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