Variant report

Variant	rs72880182
Chromosome Location	chr4:97149017-97149018
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10002816	0.81[ASN][1000 genomes]
rs10004804	0.83[ASN][1000 genomes]
rs10856919	0.85[ASN][1000 genomes]
rs11932384	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12499067	0.88[ASN][1000 genomes]
rs12508802	0.81[ASN][1000 genomes]
rs12642471	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12642621	0.80[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs12644982	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12650441	0.83[ASN][1000 genomes]
rs1373331	0.85[ASN][1000 genomes]
rs1395199	0.83[ASN][1000 genomes]
rs1425361	0.82[ASN][1000 genomes]
rs1506318	0.81[ASN][1000 genomes]
rs1506321	0.81[ASN][1000 genomes]
rs17025209	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17025493	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1834360	0.82[ASN][1000 genomes]
rs1847963	0.83[ASN][1000 genomes]
rs1847964	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1847966	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1847967	0.81[ASN][1000 genomes]
rs1857889	0.83[ASN][1000 genomes]
rs1948912	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2083922	0.81[ASN][1000 genomes]
rs2113973	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28633781	0.83[ASN][1000 genomes]
rs36039803	0.81[ASN][1000 genomes]
rs4146410	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4146411	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4343731	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4414959	0.83[ASN][1000 genomes]
rs4699283	0.82[ASN][1000 genomes]
rs4699483	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4699485	0.88[ASN][1000 genomes]
rs4699496	0.82[ASN][1000 genomes]
rs4699503	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs5017329	0.81[ASN][1000 genomes]
rs55680326	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55847611	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60275360	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6532596	0.88[ASN][1000 genomes]
rs6532597	0.88[ASN][1000 genomes]
rs6820075	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6826156	0.88[ASN][1000 genomes]
rs6826817	0.82[ASN][1000 genomes]
rs6835808	0.82[ASN][1000 genomes]
rs72880179	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72883800	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72885446	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7653937	0.83[ASN][1000 genomes]
rs766061	0.83[ASN][1000 genomes]
rs7665151	0.89[ASN][1000 genomes]
rs7671563	0.89[ASN][1000 genomes]
rs7671604	0.83[ASN][1000 genomes]
rs7676317	0.88[ASN][1000 genomes]
rs7676764	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830013	chr4:97033125-97204291	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1003868	chr4:97068155-97222544	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv470057	chr4:97104880-97311657	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv461589	chr4:97104881-97311657	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv594916	chr4:97104881-97311657	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv879631	chr4:97114706-97263153	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv879632	chr4:97118539-97308914	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv879633	chr4:97125086-97263153	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv2763381	chr4:97140746-97193871	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:97148600-97149400	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr4:97148600-97149800	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr4:97149000-97149400	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr4:97149000-97150000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr4:97149000-97150000	Enhancers	HUES64 Cell Line	embryonic stem cell

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