Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10004804	0.87[ASN][1000 genomes]
rs10856919	0.87[ASN][1000 genomes]
rs11932384	0.81[ASN][1000 genomes]
rs12499067	0.83[ASN][1000 genomes]
rs12642621	0.92[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12644982	0.81[ASN][1000 genomes]
rs1847969	0.88[CHB][hapmap];0.94[JPT][hapmap]
rs2113973	0.81[ASN][1000 genomes]
rs2197322	0.81[CHB][hapmap]
rs4293790	1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[YRI][hapmap]
rs4699483	0.96[ASN][1000 genomes]
rs4699485	0.83[ASN][1000 genomes]
rs55847611	0.92[ASN][1000 genomes]
rs6532596	0.83[ASN][1000 genomes]
rs6532597	0.83[ASN][1000 genomes]
rs6826156	0.83[ASN][1000 genomes]
rs6834542	0.86[ASN][1000 genomes]
rs72880179	0.89[ASN][1000 genomes]
rs72880182	0.89[ASN][1000 genomes]
rs7671563	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7676317	0.83[ASN][1000 genomes]
rs7676764	0.83[ASN][1000 genomes]
rs9884259	0.90[JPT][hapmap]
rs9998228	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9999006	0.81[CHB][hapmap];0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594915	chr4:96628653-97086618	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv830013	chr4:97033125-97204291	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1003868	chr4:97068155-97222544	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7665151	RG9MTD2	cis	parietal	SCAN
rs7665151	METAP1	cis	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:97083600-97088200	Enhancers	Osteobl	bone
2	chr4:97085000-97086200	Enhancers	NH-A	brain
3	chr4:97085200-97087000	Enhancers	HMEC	breast
4	chr4:97085400-97087000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr4:97085800-97086600	Weak transcription	HSMM	muscle
6	chr4:97085800-97087800	Enhancers	HSMMtube	muscle
7	chr4:97085800-97088200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr4:97085800-97088400	Enhancers	Muscle Satellite Cultured Cells	--

Quick Search: