Variant report

Variant	rs4293790
Chromosome Location	chr4:97128801-97128802
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10004804	0.85[ASN][1000 genomes]
rs10016180	0.95[JPT][hapmap]
rs10856919	0.87[ASN][1000 genomes]
rs11932384	0.87[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs12499067	0.91[ASN][1000 genomes]
rs12642471	0.87[ASN][1000 genomes]
rs12642621	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12644982	0.89[ASN][1000 genomes]
rs1373331	0.82[ASN][1000 genomes]
rs1425361	0.85[ASN][1000 genomes]
rs17025209	0.87[AFR][1000 genomes]
rs1834360	0.85[ASN][1000 genomes]
rs1847966	0.81[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs1847969	1.00[JPT][hapmap]
rs1948912	0.81[ASN][1000 genomes]
rs2113973	0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs2197322	0.83[JPT][hapmap]
rs4146410	0.81[ASN][1000 genomes]
rs4146411	0.81[ASN][1000 genomes]
rs4343731	0.80[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs4699483	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4699485	0.91[ASN][1000 genomes]
rs55680326	0.85[ASN][1000 genomes]
rs55847611	0.99[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60275360	0.81[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs6532596	0.91[ASN][1000 genomes]
rs6532597	0.91[ASN][1000 genomes]
rs6820075	0.81[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs6826156	0.91[ASN][1000 genomes]
rs6826817	0.85[ASN][1000 genomes]
rs72880179	0.93[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs72880182	0.96[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs72883800	0.81[ASN][1000 genomes]
rs7665151	0.92[ASN][1000 genomes]
rs7671563	0.91[ASN][1000 genomes]
rs7676317	0.91[ASN][1000 genomes]
rs7676764	0.91[ASN][1000 genomes]
rs9884259	0.95[JPT][hapmap]
rs9999006	0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830013	chr4:97033125-97204291	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1003868	chr4:97068155-97222544	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv470057	chr4:97104880-97311657	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv461589	chr4:97104881-97311657	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv594916	chr4:97104881-97311657	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv879631	chr4:97114706-97263153	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv879632	chr4:97118539-97308914	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv879633	chr4:97125086-97263153	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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