Variant report

Variant	rs10856919
Chromosome Location	chr4:97097230-97097231
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:97090606..97093234-chr4:97096848..97099825,3	K562	blood:
2	chr4:97090980..97093234-chr4:97096848..97099424,2	K562	blood:

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10002816	0.84[ASN][1000 genomes]
rs10004804	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10007900	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11097501	0.81[ASN][1000 genomes]
rs11097502	0.80[ASN][1000 genomes]
rs11942724	0.87[ASN][1000 genomes]
rs12499067	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12501360	0.82[ASN][1000 genomes]
rs12508802	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12509883	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12642621	0.86[ASN][1000 genomes]
rs12650441	0.85[ASN][1000 genomes]
rs13104802	0.84[EUR][1000 genomes]
rs13121458	0.81[ASN][1000 genomes]
rs13122821	0.81[ASN][1000 genomes]
rs13122856	0.81[ASN][1000 genomes]
rs13150508	0.83[EUR][1000 genomes]
rs1354704	0.84[EUR][1000 genomes]
rs1373331	0.87[ASN][1000 genomes]
rs1395199	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs1425361	0.90[ASN][1000 genomes]
rs1444021	0.81[ASN][1000 genomes]
rs1506304	0.84[EUR][1000 genomes]
rs1506305	0.84[EUR][1000 genomes]
rs1506306	0.84[EUR][1000 genomes]
rs1506318	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1506321	0.83[ASN][1000 genomes]
rs1605227	0.84[EUR][1000 genomes]
rs1834360	0.90[ASN][1000 genomes]
rs1847963	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs1847967	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1847968	0.80[ASN][1000 genomes]
rs1847969	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1857889	0.85[ASN][1000 genomes]
rs1857890	0.81[ASN][1000 genomes]
rs1867400	0.81[ASN][1000 genomes]
rs1911077	0.84[EUR][1000 genomes]
rs2048022	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2083922	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2174584	0.84[EUR][1000 genomes]
rs28523416	0.84[EUR][1000 genomes]
rs28565871	0.86[EUR][1000 genomes]
rs28633781	0.85[ASN][1000 genomes]
rs28788633	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35257138	0.84[EUR][1000 genomes]
rs36039803	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4414959	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4699283	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4699285	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4699287	0.83[EUR][1000 genomes]
rs4699483	0.91[ASN][1000 genomes]
rs4699485	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4699496	0.80[ASN][1000 genomes]
rs5017329	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55847611	0.87[ASN][1000 genomes]
rs6532596	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6532597	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6532600	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6815558	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6826156	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6826817	0.90[ASN][1000 genomes]
rs6830120	0.84[EUR][1000 genomes]
rs6832934	0.84[EUR][1000 genomes]
rs6834542	0.90[ASN][1000 genomes]
rs6835808	0.84[ASN][1000 genomes]
rs6837318	0.81[ASN][1000 genomes]
rs6857113	0.81[ASN][1000 genomes]
rs72880179	0.85[ASN][1000 genomes]
rs72880182	0.85[ASN][1000 genomes]
rs7653937	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs766061	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs7665151	0.87[ASN][1000 genomes]
rs7671563	0.86[ASN][1000 genomes]
rs7671604	0.85[ASN][1000 genomes]
rs7673756	0.84[EUR][1000 genomes]
rs7676317	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7676764	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7686174	0.83[EUR][1000 genomes]
rs7690397	0.80[ASN][1000 genomes]
rs9307167	0.81[ASN][1000 genomes]
rs9307168	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs931841	0.84[EUR][1000 genomes]
rs9884259	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9884940	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830013	chr4:97033125-97204291	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1003868	chr4:97068155-97222544	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:97097000-97097400	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr4:97097000-97097400	Enhancers	Fetal Lung	lung
3	chr4:97097000-97097600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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