Variant report

Variant	rs11942724
Chromosome Location	chr4:97107029-97107030
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10004804	0.84[ASN][1000 genomes]
rs10016180	0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[YRI][hapmap]
rs10856919	0.87[ASN][1000 genomes]
rs12499067	0.84[ASN][1000 genomes]
rs1847969	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs2197322	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs4293790	0.91[JPT][hapmap]
rs4699483	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4699485	0.84[ASN][1000 genomes]
rs6532596	0.84[ASN][1000 genomes]
rs6532597	0.84[ASN][1000 genomes]
rs6826156	0.84[ASN][1000 genomes]
rs7676317	0.84[ASN][1000 genomes]
rs7676764	0.84[ASN][1000 genomes]
rs9884259	0.94[CHB][hapmap];0.95[JPT][hapmap]
rs9999006	0.95[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830013	chr4:97033125-97204291	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1003868	chr4:97068155-97222544	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv470057	chr4:97104880-97311657	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv461589	chr4:97104881-97311657	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv594916	chr4:97104881-97311657	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:97105400-97109000	Enhancers	Dnd41	blood
2	chr4:97106600-97107600	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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