Variant report

Variant	rs931842
Chromosome Location	chr4:97264534-97264535
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 174 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:168)

rs_ID	r²[population]
rs10002816	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10006557	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10007900	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10012312	0.83[EUR][1000 genomes]
rs10012487	0.82[EUR][1000 genomes]
rs10015613	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10016180	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10018197	0.82[EUR][1000 genomes]
rs10021889	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10022608	0.82[EUR][1000 genomes]
rs10213429	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11097501	0.88[ASN][1000 genomes]
rs11097502	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11097505	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11097514	0.85[EUR][1000 genomes]
rs11932384	0.83[ASN][1000 genomes]
rs11935830	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12499067	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12501360	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12508802	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12509883	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12639647	0.82[EUR][1000 genomes]
rs12642471	0.85[ASN][1000 genomes]
rs12644982	0.83[ASN][1000 genomes]
rs12645609	0.84[EUR][1000 genomes]
rs12645669	0.85[EUR][1000 genomes]
rs12646509	0.84[EUR][1000 genomes]
rs12650441	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13102896	0.84[ASN][1000 genomes]
rs13104802	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs13121458	0.88[ASN][1000 genomes]
rs13122821	0.88[ASN][1000 genomes]
rs13122856	0.89[ASN][1000 genomes]
rs13150508	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1354704	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1354706	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1373331	0.83[ASN][1000 genomes]
rs1395199	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1400341	0.82[EUR][1000 genomes]
rs1425361	0.80[ASN][1000 genomes]
rs1444021	0.88[ASN][1000 genomes]
rs1506304	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1506305	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1506306	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1506317	0.91[ASN][1000 genomes]
rs1506318	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1506319	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1506320	0.93[ASN][1000 genomes]
rs1506321	0.87[ASN][1000 genomes]
rs1516670	0.84[EUR][1000 genomes]
rs1516672	0.82[EUR][1000 genomes]
rs1567036	0.92[ASN][1000 genomes]
rs1588981	0.85[EUR][1000 genomes]
rs1605227	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs17025493	0.89[ASN][1000 genomes]
rs1834360	0.80[ASN][1000 genomes]
rs1847963	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1847964	0.88[ASN][1000 genomes]
rs1847966	0.83[ASN][1000 genomes]
rs1847967	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1847968	0.88[ASN][1000 genomes]
rs1847969	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1857889	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1857890	0.85[ASN][1000 genomes]
rs1867400	0.88[ASN][1000 genomes]
rs1911074	0.93[ASN][1000 genomes]
rs1911076	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1911077	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1948912	0.91[ASN][1000 genomes]
rs2048022	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2083922	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2090376	0.82[EUR][1000 genomes]
rs2090377	0.82[EUR][1000 genomes]
rs2113973	0.83[ASN][1000 genomes]
rs2174584	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2197322	1.00[CHB][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs2203629	0.85[EUR][1000 genomes]
rs2203631	0.82[EUR][1000 genomes]
rs28407945	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28409524	0.84[EUR][1000 genomes]
rs28523416	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28565871	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28633781	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2865736	0.93[ASN][1000 genomes]
rs28788633	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs35257138	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs36039803	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4146410	0.91[ASN][1000 genomes]
rs4146411	0.91[ASN][1000 genomes]
rs4293790	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs4299674	0.85[EUR][1000 genomes]
rs4343731	0.85[ASN][1000 genomes]
rs4414959	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4611939	0.93[ASN][1000 genomes]
rs4613576	0.93[ASN][1000 genomes]
rs4619895	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4699283	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4699285	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4699287	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4699288	0.94[ASN][1000 genomes]
rs4699485	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4699496	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4699501	0.93[ASN][1000 genomes]
rs4699503	0.89[ASN][1000 genomes]
rs4699512	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4699513	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4699524	0.81[EUR][1000 genomes]
rs5017329	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs55680326	0.87[ASN][1000 genomes]
rs57499976	0.84[EUR][1000 genomes]
rs58334182	0.84[ASN][1000 genomes]
rs59070882	0.84[EUR][1000 genomes]
rs60275360	0.85[ASN][1000 genomes]
rs6532596	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6532597	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6532600	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6532615	0.84[EUR][1000 genomes]
rs6532622	0.82[EUR][1000 genomes]
rs6532623	0.82[EUR][1000 genomes]
rs6532626	0.82[EUR][1000 genomes]
rs6815558	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6815743	0.91[ASN][1000 genomes]
rs6816447	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6820075	0.85[ASN][1000 genomes]
rs6826069	0.84[EUR][1000 genomes]
rs6826156	0.81[ASN][1000 genomes]
rs6826817	0.80[ASN][1000 genomes]
rs6827340	0.85[EUR][1000 genomes]
rs6829988	0.82[EUR][1000 genomes]
rs6830120	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6832934	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6835808	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6837318	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6838629	0.84[EUR][1000 genomes]
rs6841294	0.93[ASN][1000 genomes]
rs6852663	0.84[EUR][1000 genomes]
rs6855505	0.82[EUR][1000 genomes]
rs6855768	0.92[ASN][1000 genomes]
rs6856143	0.82[EUR][1000 genomes]
rs6857113	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72883800	0.91[ASN][1000 genomes]
rs72885446	0.89[ASN][1000 genomes]
rs72885485	0.82[ASN][1000 genomes]
rs7653937	0.92[ASN][1000 genomes]
rs7654868	0.82[EUR][1000 genomes]
rs766061	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7664207	0.84[EUR][1000 genomes]
rs7667137	0.84[EUR][1000 genomes]
rs7670117	0.83[EUR][1000 genomes]
rs7671604	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7673756	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7676317	0.81[ASN][1000 genomes]
rs7676764	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7684850	0.83[EUR][1000 genomes]
rs7686174	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7688060	0.84[EUR][1000 genomes]
rs7690397	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9307167	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9307168	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs931841	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs938547	0.83[ASN][1000 genomes]
rs938548	0.83[ASN][1000 genomes]
rs9686051	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9884259	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9884940	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9993653	0.84[EUR][1000 genomes]
rs9998383	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9999006	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470057	chr4:97104880-97311657	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv461589	chr4:97104881-97311657	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv594916	chr4:97104881-97311657	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv879632	chr4:97118539-97308914	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv461590	chr4:97197036-97266060	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv594917	chr4:97197036-97266060	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs931842	DAPP1	cis	parietal	SCAN
rs931842	RAP1GDS1	cis	parietal	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:97260800-97265000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr4:97262800-97270400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:97263000-97264600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr4:97263400-97264800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr4:97263400-97266200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr4:97264000-97265200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr4:97264000-97265200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
8	chr4:97264000-97268000	Weak transcription	HUVEC	blood vessel
9	chr4:97264200-97264600	Active TSS	HUES6 Cell Line	embryonic stem cell
10	chr4:97264200-97265000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
11	chr4:97264400-97264800	Active TSS	ES-I3 Cell Line	embryonic stem cell
12	chr4:97264400-97265000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell

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