Variant report

Variant	rs1829360
Chromosome Location	chr11:86833565-86833566
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:86818728..86820494-chr11:86831907..86834474,2	K562	blood:

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs11234985	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1829362	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2048973	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2247537	0.84[AMR][1000 genomes]
rs2445560	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2445561	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2451053	0.84[AMR][1000 genomes]
rs2451061	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2451062	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2451063	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2451064	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2451065	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2512338	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2512342	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2512343	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2512344	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2512350	0.84[AMR][1000 genomes]
rs2512494	0.80[EUR][1000 genomes]
rs2512495	0.80[EUR][1000 genomes]
rs2512496	0.80[EUR][1000 genomes]
rs2932120	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3018709	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3018710	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3103386	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3133320	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3133321	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs483373	0.86[AMR][1000 genomes]
rs483548	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs487370	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs487678	0.84[AMR][1000 genomes]
rs488227	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs491895	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs492211	0.84[AMR][1000 genomes]
rs496671	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs497592	0.84[AMR][1000 genomes]
rs499388	0.84[AMR][1000 genomes]
rs500312	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs502165	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs509277	0.82[ASN][1000 genomes]
rs518489	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs535515	0.84[AMR][1000 genomes]
rs538494	0.84[AMR][1000 genomes]
rs543915	0.84[AMR][1000 genomes]
rs550988	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs564877	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs578533	0.84[AMR][1000 genomes]
rs581833	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs583334	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs593243	0.84[AMR][1000 genomes]
rs595930	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs597344	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs597406	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs609914	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs612523	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs628447	0.84[AMR][1000 genomes]
rs628686	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs630249	0.84[AMR][1000 genomes]
rs643145	0.84[AMR][1000 genomes]
rs643175	0.84[AMR][1000 genomes]
rs644083	0.84[AMR][1000 genomes]
rs644457	0.84[AMR][1000 genomes]
rs655050	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs655907	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs660246	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs672194	0.84[AMR][1000 genomes]
rs672269	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs687244	0.84[AMR][1000 genomes]
rs687651	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs688542	0.84[AMR][1000 genomes]
rs692857	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7949278	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7949665	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv1037042	chr11:86586876-86978492	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv541119	chr11:86586876-86978492	Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv898058	chr11:86754948-86889284	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv898059	chr11:86754948-86949369	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1043562	chr11:86755535-87547185	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
8	nsv541120	chr11:86755535-87547185	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
9	nsv1046288	chr11:86757573-87158571	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
10	esv1844274	chr11:86776992-86872908	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv1045057	chr11:86794670-87033779	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	nsv541121	chr11:86794670-87033779	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
13	nsv468777	chr11:86794856-86985581	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv555707	chr11:86794856-86985581	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
15	nsv898060	chr11:86822077-86912633	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86788600-86836400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:86804600-86839400	Weak transcription	Fetal Kidney	kidney
3	chr11:86806800-86835800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr11:86809000-86844000	Weak transcription	Ovary	ovary
5	chr11:86809000-86876000	Weak transcription	Left Ventricle	heart
6	chr11:86816600-86838000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr11:86818200-86839200	Weak transcription	Fetal Lung	lung
8	chr11:86818200-86842800	Weak transcription	Aorta	Aorta
9	chr11:86818400-86842400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr11:86828800-86836200	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr11:86830800-86836000	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr11:86831000-86838000	Weak transcription	HepG2	liver
13	chr11:86831600-86836000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr11:86832200-86835800	Weak transcription	A549	lung
15	chr11:86832400-86835200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr11:86833200-86837800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr11:86833400-86849400	Weak transcription	Primary hematopoietic stem cells	blood

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