Variant report

Variant	rs182949387
Chromosome Location	chr3:17561546-17561547
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:17559404..17562801-chr3:17567109..17569142,3	K562	blood:
2	chr3:17561404..17563252-chr3:17564613..17567165,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876590	chr3:17230884-17604963	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2755406	chr3:17237396-17589896	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv876591	chr3:17246392-17671992	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv869378	chr3:17338236-17576692	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv915606	chr3:17357042-17668263	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv999568	chr3:17360261-17594750	Enhancers Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv999460	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv536510	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv876592	chr3:17369313-17604963	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	esv2755442	chr3:17372796-17589896	Genic enhancers Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv876593	chr3:17419843-17604963	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv3715	chr3:17514325-17578178	Enhancers ZNF genes & repeats Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
13	nsv589850	chr3:17543829-17563378	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
14	nsv1013069	chr3:17560456-17783372	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17523000-17570000	Weak transcription	Spleen	Spleen
2	chr3:17530600-17587600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr3:17534200-17561600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr3:17536400-17562600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr3:17536400-17568800	Weak transcription	GM12878-XiMat	blood
6	chr3:17536400-17574800	Weak transcription	Dnd41	blood
7	chr3:17536600-17561600	Weak transcription	Fetal Muscle Trunk	muscle
8	chr3:17536600-17562200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr3:17536600-17588000	Weak transcription	Left Ventricle	heart
10	chr3:17548600-17579200	Weak transcription	Primary hematopoietic stem cells	blood
11	chr3:17548800-17564600	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr3:17549400-17561800	Weak transcription	Small Intestine	intestine
13	chr3:17550000-17583800	Weak transcription	Primary B cells from cord blood	blood
14	chr3:17550200-17574800	Weak transcription	Primary B cells from peripheral blood	blood
15	chr3:17557400-17562600	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr3:17557600-17597200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr3:17558400-17563200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr3:17558800-17561600	Weak transcription	Rectal Smooth Muscle	rectum
19	chr3:17559000-17563400	Weak transcription	Fetal Muscle Leg	muscle
20	chr3:17559800-17561600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr3:17560200-17562600	Weak transcription	Aorta	Aorta
22	chr3:17560400-17561600	Weak transcription	A549	lung
23	chr3:17560600-17562000	Enhancers	Fetal Heart	heart
24	chr3:17560600-17562000	Weak transcription	Fetal Stomach	stomach
25	chr3:17560600-17562200	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr3:17560600-17562400	Weak transcription	Psoas Muscle	Psoas
27	chr3:17560600-17562600	Weak transcription	Adipose Nuclei	Adipose
28	chr3:17560600-17562600	Weak transcription	Brain Substantia Nigra	brain
29	chr3:17560600-17567200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr3:17560600-17568800	Weak transcription	Ovary	ovary
31	chr3:17560600-17579800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr3:17560800-17564600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr3:17561000-17563200	Weak transcription	Monocytes-CD14+_RO01746	blood
34	chr3:17561000-17599000	Weak transcription	Pancreas	Pancrea
35	chr3:17561400-17562000	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links