Variant report

Variant	rs183039673
Chromosome Location	chr3:119657804-119657805
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:119655041..119657977-chr3:119815420..119818415,2	K562	blood:
2	chr3:119651638..119653513-chr3:119656537..119658183,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949589	chr3:119560606-120175917	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv829696	chr3:119567659-119711405	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1001476	chr3:119575386-120075417	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
4	nsv536704	chr3:119575386-120075417	Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
5	esv3505316	chr3:119654062-119658060	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3505317	chr3:119654512-119657910	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3489267	chr3:119657212-119658447	Weak transcription Enhancers Genic enhancers Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3489268	chr3:119657212-119658447	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119546000-119663400	Weak transcription	Lung	lung
2	chr3:119597600-119659000	Weak transcription	Gastric	stomach
3	chr3:119608200-119677800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr3:119611200-119667000	Weak transcription	Pancreas	Pancrea
5	chr3:119611400-119682200	Weak transcription	HSMMtube	muscle
6	chr3:119625000-119668200	Weak transcription	Hela-S3	cervix
7	chr3:119628200-119663200	Weak transcription	Right Atrium	heart
8	chr3:119629600-119672200	Weak transcription	Fetal Stomach	stomach
9	chr3:119630800-119663200	Weak transcription	Esophagus	oesophagus
10	chr3:119630800-119697400	Weak transcription	Thymus	Thymus
11	chr3:119631000-119717000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr3:119631400-119660800	Weak transcription	Fetal Muscle Leg	muscle
13	chr3:119635000-119665400	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr3:119635000-119667000	Weak transcription	Placenta	Placenta
15	chr3:119635400-119664600	Weak transcription	HMEC	breast
16	chr3:119636400-119667200	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr3:119640000-119663800	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr3:119640600-119664400	Weak transcription	HSMM	muscle
19	chr3:119640600-119665000	Weak transcription	Primary B cells from peripheral blood	blood
20	chr3:119640600-119672400	Weak transcription	Osteobl	bone
21	chr3:119640800-119658000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr3:119640800-119665400	Weak transcription	Fetal Thymus	thymus
23	chr3:119641000-119661800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr3:119641000-119662600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr3:119641000-119663800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr3:119641000-119681600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr3:119641000-119681600	Weak transcription	Fetal Intestine Small	intestine
28	chr3:119641000-119694400	Weak transcription	Fetal Lung	lung
29	chr3:119641200-119664400	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr3:119641200-119666400	Weak transcription	HepG2	liver
31	chr3:119641200-119681200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr3:119642200-119665600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr3:119644400-119658000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr3:119645400-119669600	Weak transcription	Psoas Muscle	Psoas
35	chr3:119650200-119660600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr3:119650200-119660800	Weak transcription	A549	lung
37	chr3:119650200-119669800	Weak transcription	Liver	Liver
38	chr3:119650400-119669600	Weak transcription	Left Ventricle	heart
39	chr3:119653400-119661600	Weak transcription	NHDF-Ad	bronchial
40	chr3:119653600-119669600	Weak transcription	Ovary	ovary
41	chr3:119655200-119658000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr3:119655600-119658200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr3:119656000-119658200	Enhancers	Dnd41	blood
44	chr3:119656200-119658800	Enhancers	Primary T helper cells PMA-I stimulated	--
45	chr3:119656200-119663400	Weak transcription	Duodenum Mucosa	Duodenum
46	chr3:119656400-119658000	Weak transcription	Small Intestine	intestine
47	chr3:119656400-119658000	Weak transcription	NHEK	skin
48	chr3:119656400-119662200	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr3:119656400-119662400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr3:119656400-119663200	Weak transcription	Primary B cells from cord blood	blood

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