Variant report

Variant	rs1830863
Chromosome Location	chr13:95413151-95413152
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12430714	1.00[ASN][1000 genomes]
rs12877908	1.00[ASN][1000 genomes]
rs35787279	1.00[ASN][1000 genomes]
rs35858065	1.00[ASN][1000 genomes]
rs41277656	1.00[AFR][1000 genomes]
rs9524612	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv983615	chr13:95410835-95413290	Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv832687	chr13:95412811-95582161	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95410600-95413200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr13:95412600-95413600	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr13:95412800-95413200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr13:95412800-95413200	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr13:95412800-95413400	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr13:95412800-95413600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr13:95412800-95413800	Enhancers	H9 Cell Line	embryonic stem cell
8	chr13:95412800-95414400	Enhancers	H1 Cell Line	embryonic stem cell
9	chr13:95412800-95414600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr13:95413000-95413800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr13:95413000-95414200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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