Variant report

Variant	rs183206480
Chromosome Location	chr5:118318177-118318178
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:118315876..118318901-chr5:118321943..118324259,3	MCF-7	breast:
2	chr5:118315792..118320529-chr5:118321733..118325729,5	K562	blood:
3	chr5:118315933..118319835-chr5:118323303..118326680,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169570	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882767	chr5:117931730-118385691	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv1017548	chr5:118276479-118358394	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1015878	chr5:118288904-118414706	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv537881	chr5:118288904-118414706	Active TSS Genic enhancers Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv969271	chr5:118317943-118323256	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118304600-118321600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr5:118305200-118320400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr5:118305200-118322400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr5:118309600-118323000	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr5:118310800-118320800	Weak transcription	Hela-S3	cervix
6	chr5:118311400-118322800	Weak transcription	Primary B cells from peripheral blood	blood
7	chr5:118313000-118323000	Weak transcription	Fetal Heart	heart
8	chr5:118313600-118322200	Weak transcription	Primary B cells from cord blood	blood
9	chr5:118314000-118322400	Weak transcription	Primary T cells from cord blood	blood
10	chr5:118314600-118322400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr5:118314600-118323000	Weak transcription	Brain Angular Gyrus	brain
12	chr5:118314600-118323400	Weak transcription	Aorta	Aorta
13	chr5:118315600-118322800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr5:118315600-118322800	Weak transcription	Brain Hippocampus Middle	brain
15	chr5:118316000-118323000	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr5:118316000-118323200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr5:118316200-118321600	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr5:118316200-118323000	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr5:118316200-118323200	Weak transcription	Primary hematopoietic stem cells	blood
20	chr5:118316200-118323400	Weak transcription	Ovary	ovary
21	chr5:118316200-118323800	Weak transcription	Gastric	stomach
22	chr5:118316400-118322000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr5:118316800-118323000	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr5:118317600-118318200	Enhancers	NHDF-Ad	bronchial
25	chr5:118317800-118320200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr5:118318000-118318200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr5:118318000-118319600	Weak transcription	Muscle Satellite Cultured Cells	--

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