Variant report

Variant	rs1832745
Chromosome Location	chr10:112572873-112572874
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:112569973..112573106-chr10:112630390..112633611,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000203497	Chromatin interaction
ENSG00000150593	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10787283	0.82[JPT][hapmap]
rs11195340	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1417634	0.80[EUR][1000 genomes]
rs1980689	0.82[EUR][1000 genomes]
rs4918599	0.80[TSI][hapmap]
rs7072681	0.81[ASW][hapmap];0.93[GIH][hapmap];0.83[MKK][hapmap];0.82[TSI][hapmap];0.82[EUR][1000 genomes]
rs726804	0.85[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045608	chr10:112524813-112677557	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1041758	chr10:112552897-112677557	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1832745	SORCS1	cis	parietal	SCAN

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112558000-112578400	Weak transcription	Aorta	Aorta
2	chr10:112562800-112576800	Weak transcription	Psoas Muscle	Psoas
3	chr10:112564000-112581600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr10:112564200-112575000	Weak transcription	Stomach Smooth Muscle	stomach
5	chr10:112564200-112579200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:112565400-112576000	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr10:112565600-112574800	Weak transcription	Colon Smooth Muscle	Colon
8	chr10:112567400-112576200	Weak transcription	HSMMtube	muscle
9	chr10:112568000-112575200	Weak transcription	Esophagus	oesophagus
10	chr10:112568200-112573000	Weak transcription	Primary T cells from cord blood	blood
11	chr10:112568400-112573600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr10:112568400-112575800	Weak transcription	Gastric	stomach
13	chr10:112568600-112577400	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr10:112568800-112573000	Weak transcription	Stomach Mucosa	stomach
15	chr10:112568800-112573800	Weak transcription	Duodenum Mucosa	Duodenum
16	chr10:112569000-112573600	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr10:112569000-112578000	Weak transcription	Colonic Mucosa	Colon
18	chr10:112570200-112576200	Weak transcription	Pancreas	Pancrea
19	chr10:112571000-112575600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr10:112571800-112573200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr10:112571800-112573200	Genic enhancers	Left Ventricle	heart
22	chr10:112572000-112573200	Enhancers	Placenta	Placenta
23	chr10:112572200-112573000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
24	chr10:112572200-112574400	Strong transcription	Skeletal Muscle Male	skeletal muscle
25	chr10:112572200-112577600	Weak transcription	Adipose Nuclei	Adipose
26	chr10:112572400-112573000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr10:112572400-112574000	Strong transcription	Skeletal Muscle Female	skeletal muscle
28	chr10:112572400-112575800	Enhancers	Fetal Intestine Large	intestine
29	chr10:112572400-112575800	Enhancers	Fetal Intestine Small	intestine
30	chr10:112572400-112575800	Weak transcription	Fetal Muscle Trunk	muscle
31	chr10:112572400-112575800	Weak transcription	Right Atrium	heart
32	chr10:112572600-112573000	Weak transcription	Right Ventricle	heart
33	chr10:112572600-112573400	Strong transcription	K562	blood
34	chr10:112572600-112574000	Enhancers	HepG2	liver
35	chr10:112572600-112575800	Weak transcription	Lung	lung
36	chr10:112572600-112576800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr10:112572600-112593800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr10:112572800-112577800	Genic enhancers	Fetal Heart	heart
39	chr10:112572800-112581400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr10:112572800-112582200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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