Variant report

Variant	rs10787283
Chromosome Location	chr10:112580880-112580881
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:112562895..112564656-chr10:112578685..112581369,2	K562	blood:
2	chr10:112580829..112583649-chr10:112594219..112597550,3	MCF-7	breast:
3	chr10:112562895..112565323-chr10:112578777..112581369,2	K562	blood:
4	chr10:112580361..112582375-chr10:112638543..112641379,2	MCF-7	breast:
5	chr10:112580700..112582499-chr10:112597516..112599127,2	K562	blood:
6	chr10:112579419..112581371-chr10:112586517..112588214,2	K562	blood:
7	chr10:112579505..112583802-chr10:112587400..112591373,5	MCF-7	breast:
8	chr10:112580755..112589346-chr10:112627817..112636075,27	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000150593	Chromatin interaction
ENSG00000203867	Chromatin interaction
ENSG00000232470	Chromatin interaction
ENSG00000203497	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10885052	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10885053	0.83[AMR][1000 genomes]
rs10885054	0.81[CEU][hapmap]
rs10885055	0.85[CEU][hapmap]
rs11195340	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12573386	0.89[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs1417634	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1832745	0.82[JPT][hapmap]
rs1923807	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1980689	0.83[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4918595	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4918598	0.88[CEU][hapmap];0.90[JPT][hapmap];0.80[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4918599	0.92[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4918600	0.96[CEU][hapmap];0.91[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7072681	0.88[CEU][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs726803	0.83[CEU][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs726804	0.92[CEU][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7922732	0.83[CEU][hapmap]
rs942076	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045608	chr10:112524813-112677557	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1041758	chr10:112552897-112677557	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv467455	chr10:112579299-112612471	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv552172	chr10:112579299-112612471	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv896003	chr10:112579299-112631211	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv896002	chr10:112579299-112638028	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	nsv1051566	chr10:112580049-112730573	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10787283	PDCD4	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112564000-112581600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr10:112572600-112593800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:112572800-112581400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:112572800-112582200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr10:112575200-112582400	Enhancers	Esophagus	oesophagus
6	chr10:112575400-112581400	Enhancers	Fetal Muscle Leg	muscle
7	chr10:112575800-112583600	Enhancers	Right Atrium	heart
8	chr10:112576200-112583200	Enhancers	Pancreas	Pancrea
9	chr10:112576800-112584800	Enhancers	Psoas Muscle	Psoas
10	chr10:112577200-112590800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr10:112577400-112581000	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr10:112577400-112584800	Enhancers	Fetal Stomach	stomach
13	chr10:112577600-112583000	Enhancers	Adipose Nuclei	Adipose
14	chr10:112577800-112582400	Weak transcription	Primary B cells from peripheral blood	blood
15	chr10:112577800-112582400	Enhancers	Right Ventricle	heart
16	chr10:112577800-112593400	Weak transcription	Thymus	Thymus
17	chr10:112578000-112583800	Enhancers	Fetal Brain Male	brain
18	chr10:112578200-112581000	Enhancers	HSMMtube	muscle
19	chr10:112578200-112582200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr10:112578200-112582600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr10:112578200-112582600	Weak transcription	Primary B cells from cord blood	blood
22	chr10:112578200-112583000	Enhancers	Ovary	ovary
23	chr10:112578200-112584800	Enhancers	Placenta	Placenta
24	chr10:112578200-112585400	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr10:112578400-112583200	Enhancers	Aorta	Aorta
26	chr10:112578400-112583200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
27	chr10:112578600-112583400	Enhancers	Fetal Lung	lung
28	chr10:112578600-112584800	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr10:112578800-112587400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr10:112578800-112592400	Weak transcription	Primary T cells from cord blood	blood
31	chr10:112579000-112581600	Weak transcription	Fetal Intestine Small	intestine
32	chr10:112579000-112582200	Weak transcription	GM12878-XiMat	blood
33	chr10:112579200-112583600	Enhancers	Brain Angular Gyrus	brain
34	chr10:112579400-112581200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr10:112579400-112581400	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr10:112579400-112582600	Enhancers	Left Ventricle	heart
37	chr10:112579400-112586000	Enhancers	Brain Germinal Matrix	brain
38	chr10:112579600-112581000	Enhancers	Brain Anterior Caudate	brain
39	chr10:112579600-112581000	Enhancers	Brain Hippocampus Middle	brain
40	chr10:112579600-112582200	Enhancers	NHDF-Ad	bronchial
41	chr10:112579600-112582800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
42	chr10:112579600-112583000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
43	chr10:112579800-112581600	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr10:112579800-112581600	Flanking Active TSS	Stomach Smooth Muscle	stomach
45	chr10:112579800-112583400	Enhancers	Brain Cingulate Gyrus	brain
46	chr10:112579800-112583400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
47	chr10:112580000-112581000	Enhancers	Brain Substantia Nigra	brain
48	chr10:112580000-112581400	Enhancers	Fetal Muscle Trunk	muscle
49	chr10:112580200-112581200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr10:112580200-112581200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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