Variant report

Variant	rs12573386
Chromosome Location	chr10:112576559-112576560
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:112575848..112579708-chr10:112630463..112632993,4	MCF-7	breast:
2	chr10:112567996..112570868-chr10:112574019..112576612,3	K562	blood:
3	chr10:112566469..112571087-chr10:112574225..112578785,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000150593	Chromatin interaction
ENSG00000203497	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10787283	0.89[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs12261853	0.81[ASN][1000 genomes]
rs1417634	0.89[ASN][1000 genomes]
rs2031128	0.83[CHB][hapmap];0.82[ASN][1000 genomes]
rs3950000	0.80[ASN][1000 genomes]
rs4918598	0.84[JPT][hapmap]
rs4918599	0.84[JPT][hapmap]
rs4918600	0.85[JPT][hapmap]
rs726804	0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045608	chr10:112524813-112677557	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1041758	chr10:112552897-112677557	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112558000-112578400	Weak transcription	Aorta	Aorta
2	chr10:112562800-112576800	Weak transcription	Psoas Muscle	Psoas
3	chr10:112564000-112581600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr10:112564200-112579200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:112568600-112577400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr10:112569000-112578000	Weak transcription	Colonic Mucosa	Colon
7	chr10:112572200-112577600	Weak transcription	Adipose Nuclei	Adipose
8	chr10:112572600-112576800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr10:112572600-112593800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr10:112572800-112577800	Genic enhancers	Fetal Heart	heart
11	chr10:112572800-112581400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr10:112572800-112582200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr10:112573000-112578800	Enhancers	Primary T cells from cord blood	blood
14	chr10:112573200-112577400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr10:112573200-112578200	Weak transcription	Placenta	Placenta
16	chr10:112573400-112580800	Weak transcription	K562	blood
17	chr10:112574000-112578000	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr10:112574200-112576600	Weak transcription	Stomach Mucosa	stomach
19	chr10:112574400-112578400	Weak transcription	Small Intestine	intestine
20	chr10:112574600-112578200	Weak transcription	Liver	Liver
21	chr10:112574600-112579000	Enhancers	GM12878-XiMat	blood
22	chr10:112574800-112579200	Enhancers	Fetal Thymus	thymus
23	chr10:112575000-112577400	Weak transcription	Duodenum Mucosa	Duodenum
24	chr10:112575000-112579800	Enhancers	Stomach Smooth Muscle	stomach
25	chr10:112575200-112576800	Weak transcription	Rectal Smooth Muscle	rectum
26	chr10:112575200-112577200	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr10:112575200-112577800	Enhancers	Primary T cells fromperipheralblood	blood
28	chr10:112575200-112577800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
29	chr10:112575200-112577800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
30	chr10:112575200-112577800	Enhancers	Thymus	Thymus
31	chr10:112575200-112582400	Enhancers	Esophagus	oesophagus
32	chr10:112575400-112579400	Genic enhancers	Left Ventricle	heart
33	chr10:112575400-112581400	Enhancers	Fetal Muscle Leg	muscle
34	chr10:112575600-112577000	Weak transcription	Colon Smooth Muscle	Colon
35	chr10:112575600-112577600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
36	chr10:112575600-112577800	Genic enhancers	Right Ventricle	heart
37	chr10:112575600-112578200	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr10:112575800-112577000	Enhancers	Gastric	stomach
39	chr10:112575800-112578200	Weak transcription	Fetal Intestine Small	intestine
40	chr10:112575800-112578200	Enhancers	Fetal Muscle Trunk	muscle
41	chr10:112575800-112578400	Weak transcription	Fetal Intestine Large	intestine
42	chr10:112575800-112583600	Enhancers	Right Atrium	heart
43	chr10:112576000-112577800	Enhancers	Primary T helper cells PMA-I stimulated	--
44	chr10:112576000-112579800	Enhancers	Skeletal Muscle Female	skeletal muscle
45	chr10:112576000-112580000	Weak transcription	Lung	lung
46	chr10:112576200-112576800	Strong transcription	HSMMtube	muscle
47	chr10:112576200-112577400	Enhancers	Primary T helper cells fromperipheralblood	blood
48	chr10:112576200-112577600	Enhancers	Primary T helper naive cells from peripheral blood	blood
49	chr10:112576200-112577600	Enhancers	Primary T killer memory cells from peripheral blood	blood
50	chr10:112576200-112583200	Enhancers	Pancreas	Pancrea

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