Variant report

Variant	rs12261853
Chromosome Location	chr10:112587094-112587095
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:112586696..112589138-chr10:112631404..112633158,2	K562	blood:
2	chr10:112582382..112584643-chr10:112585377..112589388,5	MCF-7	breast:
3	chr10:112581444..112587243-chr10:112629842..112633404,6	MCF-7	breast:
4	chr10:112580755..112589346-chr10:112627817..112636075,27	MCF-7	breast:

Variant related genes	Relation type
ENSG00000203867	Chromatin interaction
ENSG00000232470	Chromatin interaction
ENSG00000150593	Chromatin interaction
ENSG00000203497	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10885052	0.84[ASN][1000 genomes]
rs12573386	0.81[ASN][1000 genomes]
rs2031128	0.90[ASN][1000 genomes]
rs34325686	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3950000	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4525160	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72836952	0.88[EUR][1000 genomes]
rs7922732	0.88[ASN][1000 genomes]
rs942076	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045608	chr10:112524813-112677557	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1041758	chr10:112552897-112677557	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv467455	chr10:112579299-112612471	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv552172	chr10:112579299-112612471	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv896003	chr10:112579299-112631211	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv896002	chr10:112579299-112638028	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	nsv1051566	chr10:112580049-112730573	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112572600-112593800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:112577200-112590800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:112577800-112593400	Weak transcription	Thymus	Thymus
4	chr10:112578800-112587400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr10:112578800-112592400	Weak transcription	Primary T cells from cord blood	blood
6	chr10:112580400-112587400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr10:112580400-112587600	Weak transcription	Liver	Liver
8	chr10:112580400-112589800	Enhancers	Colon Smooth Muscle	Colon
9	chr10:112582600-112593000	Weak transcription	K562	blood
10	chr10:112582600-112593400	Weak transcription	Gastric	stomach
11	chr10:112582800-112587400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr10:112583000-112587600	Weak transcription	Adipose Nuclei	Adipose
13	chr10:112583000-112587600	Weak transcription	Esophagus	oesophagus
14	chr10:112583000-112587600	Weak transcription	Ovary	ovary
15	chr10:112583000-112587600	Weak transcription	Right Ventricle	heart
16	chr10:112583200-112587400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr10:112583200-112587600	Weak transcription	Pancreas	Pancrea
18	chr10:112583200-112587800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr10:112583200-112588000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr10:112583200-112588200	Weak transcription	Colonic Mucosa	Colon
21	chr10:112583200-112593400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr10:112583400-112587400	Weak transcription	Fetal Lung	lung
23	chr10:112583400-112587600	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr10:112583400-112588800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr10:112583400-112589200	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr10:112583400-112590000	Enhancers	Rectal Smooth Muscle	rectum
27	chr10:112583400-112593800	Weak transcription	Fetal Kidney	kidney
28	chr10:112583400-112594400	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr10:112583400-112594800	Weak transcription	Fetal Brain Female	brain
30	chr10:112583600-112587400	Weak transcription	Brain Anterior Caudate	brain
31	chr10:112583600-112587600	Weak transcription	Right Atrium	heart
32	chr10:112583800-112587200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr10:112584000-112589400	Weak transcription	Primary B cells from peripheral blood	blood
34	chr10:112584200-112587800	Weak transcription	Brain Hippocampus Middle	brain
35	chr10:112584200-112588200	Weak transcription	Fetal Thymus	thymus
36	chr10:112584400-112587600	Weak transcription	Aorta	Aorta
37	chr10:112584400-112587600	Weak transcription	Fetal Brain Male	brain
38	chr10:112584400-112592400	Weak transcription	Stomach Mucosa	stomach
39	chr10:112584600-112594000	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr10:112584600-112594000	Weak transcription	Small Intestine	intestine
41	chr10:112584800-112587200	Weak transcription	HSMMtube	muscle
42	chr10:112584800-112587600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr10:112584800-112587600	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr10:112584800-112587600	Weak transcription	Psoas Muscle	Psoas
45	chr10:112585000-112587600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr10:112585000-112588000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr10:112585400-112589000	Weak transcription	Left Ventricle	heart
48	chr10:112585600-112587200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr10:112585600-112588000	Enhancers	Fetal Heart	heart
50	chr10:112585600-112593800	Weak transcription	Rectal Mucosa Donor 31	rectum

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