Variant report

Variant	rs1833177
Chromosome Location	chr7:33283574-33283575
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:33283153..33284693-chr7:33295167..33297777,2	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1008582	0.82[ASN][1000 genomes]
rs1019300	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10228013	0.82[ASN][1000 genomes]
rs10228439	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10233296	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10250045	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10268074	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10270013	0.82[ASN][1000 genomes]
rs10278145	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10279081	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1030029	0.82[ASN][1000 genomes]
rs10951382	0.97[ASN][1000 genomes]
rs10951383	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12155105	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12537278	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12671191	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1345307	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1345308	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1362371	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1419898	0.81[ASN][1000 genomes]
rs1420147	0.83[ASN][1000 genomes]
rs1420155	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1420158	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1592465	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1592466	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1592467	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1819826	0.95[ASN][1000 genomes]
rs1894873	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2024430	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2392230	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2392231	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4720115	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs5012441	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6462463	0.82[ASN][1000 genomes]
rs6462464	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6462466	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6462467	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6950434	0.86[ASN][1000 genomes]
rs6976311	0.83[ASN][1000 genomes]
rs6976753	0.83[ASN][1000 genomes]
rs721533	0.83[ASN][1000 genomes]
rs764041	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7778657	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7778892	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7789344	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7791710	0.82[ASN][1000 genomes]
rs7803065	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7809540	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs964707	0.83[ASN][1000 genomes]
rs986553	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830943	chr7:33167106-33352759	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
2	nsv606610	chr7:33218763-33486316	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv916660	chr7:33272493-33506384	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33273800-33283800	Weak transcription	Fetal Lung	lung
2	chr7:33283400-33284400	Weak transcription	Brain Angular Gyrus	brain
3	chr7:33283400-33290800	Weak transcription	Fetal Kidney	kidney

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