Variant report

Variant	rs1008582
Chromosome Location	chr7:33398931-33398932
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 123 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:119)

rs_ID	r²[population]
rs1019300	0.82[ASN][1000 genomes]
rs10225698	0.85[CHB][hapmap]
rs10228013	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10228439	0.81[ASN][1000 genomes]
rs10230133	0.95[CHB][hapmap]
rs10233296	0.84[ASN][1000 genomes]
rs10250045	0.82[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10268074	0.83[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10271404	0.88[ASN][1000 genomes]
rs10278145	0.82[ASN][1000 genomes]
rs10279081	0.83[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs1030029	0.81[CHB][hapmap]
rs10951382	0.82[ASN][1000 genomes]
rs10951383	0.82[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11972278	0.95[CHB][hapmap]
rs12155105	0.86[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12537278	0.83[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12665869	0.85[CHB][hapmap]
rs12669218	0.90[ASN][1000 genomes]
rs12669595	0.85[CHB][hapmap]
rs12671191	0.83[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12671213	0.90[ASN][1000 genomes]
rs13241465	0.89[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1345277	0.85[CHB][hapmap]
rs1345307	0.82[ASN][1000 genomes]
rs1345308	0.83[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs1362228	0.89[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1362229	0.90[ASN][1000 genomes]
rs1362230	0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1362231	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs1362371	0.86[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs1419898	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1419900	0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs1419904	0.83[ASN][1000 genomes]
rs1419906	0.83[ASN][1000 genomes]
rs1419907	0.83[ASN][1000 genomes]
rs1419908	0.81[ASN][1000 genomes]
rs1419909	0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs1419910	0.82[ASN][1000 genomes]
rs1419913	0.82[ASN][1000 genomes]
rs1419914	0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs1419915	0.85[ASN][1000 genomes]
rs1419916	0.89[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs1419918	0.90[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs1419919	0.89[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs1419921	0.89[CHB][hapmap];0.82[JPT][hapmap]
rs1419925	0.89[CHB][hapmap]
rs1419927	0.84[CHB][hapmap]
rs1419928	0.95[CHB][hapmap]
rs1420155	0.82[ASN][1000 genomes]
rs1420158	0.82[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs1420159	0.87[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap]
rs1544557	0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs1592465	0.83[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1592466	0.81[ASN][1000 genomes]
rs1592467	0.81[ASN][1000 genomes]
rs1819826	0.81[ASN][1000 genomes]
rs1833177	0.82[ASN][1000 genomes]
rs1860600	0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs1894810	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs1894873	0.83[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs1968131	0.81[ASN][1000 genomes]
rs2024430	0.82[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2041419	0.84[CHB][hapmap]
rs2058342	0.95[JPT][hapmap]
rs2392231	0.82[ASN][1000 genomes]
rs2392233	0.95[CHB][hapmap]
rs2392236	0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs2893469	0.95[JPT][hapmap]
rs35436906	0.81[ASN][1000 genomes]
rs4141012	0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4236336	0.88[ASN][1000 genomes]
rs4236337	0.89[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs4391315	0.82[ASN][1000 genomes]
rs4467837	0.80[ASN][1000 genomes]
rs4509212	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs4510745	0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4582453	0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs4607502	0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs4720115	0.83[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs4720118	0.90[CHB][hapmap]
rs4720120	0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs4723285	0.93[CHB][hapmap]
rs4723288	0.84[CHB][hapmap]
rs5012441	0.86[ASN][1000 genomes]
rs6462464	0.81[ASN][1000 genomes]
rs6462467	0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs6462477	0.84[CHB][hapmap]
rs6462479	0.89[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6462482	0.81[ASN][1000 genomes]
rs6950434	0.82[CHB][hapmap]
rs6976311	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6976753	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6977009	0.90[CHB][hapmap]
rs6977178	0.81[ASN][1000 genomes]
rs721533	0.81[CHB][hapmap]
rs721851	0.95[JPT][hapmap]
rs726463	0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs726464	0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs758779	0.84[CHB][hapmap]
rs758780	0.84[CHB][hapmap]
rs764041	0.83[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7778657	0.82[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7778892	0.82[ASN][1000 genomes]
rs7779367	0.82[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs7780194	0.80[CHB][hapmap]
rs7781641	0.90[ASN][1000 genomes]
rs7783610	0.81[CHB][hapmap]
rs7785012	0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs7786748	0.81[ASN][1000 genomes]
rs7789344	0.81[ASN][1000 genomes]
rs7791710	0.82[CHB][hapmap]
rs7802888	0.95[CHB][hapmap]
rs7803065	0.83[ASN][1000 genomes]
rs7804723	0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs7805192	0.84[CHB][hapmap]
rs7809540	0.81[ASN][1000 genomes]
rs964707	0.81[CHB][hapmap]
rs986553	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606610	chr7:33218763-33486316	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv916660	chr7:33272493-33506384	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv830944	chr7:33389892-33549882	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33355200-33419600	Weak transcription	Primary T cells from cord blood	blood
2	chr7:33362200-33404400	Weak transcription	Ovary	ovary
3	chr7:33362200-33404800	Weak transcription	Fetal Lung	lung
4	chr7:33375800-33399200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr7:33377600-33404800	Weak transcription	Left Ventricle	heart
6	chr7:33378200-33404400	Weak transcription	Aorta	Aorta
7	chr7:33380000-33404400	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr7:33380600-33404800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr7:33381400-33407200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr7:33384000-33425400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr7:33385800-33407000	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr7:33386000-33407400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr7:33386400-33408200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr7:33387000-33425200	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr7:33388800-33404800	Weak transcription	Lung	lung
16	chr7:33389000-33437400	Weak transcription	Liver	Liver
17	chr7:33391600-33407400	Weak transcription	Primary hematopoietic stem cells	blood
18	chr7:33392600-33423000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr7:33393600-33419600	Weak transcription	Rectal Smooth Muscle	rectum
20	chr7:33394200-33419400	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr7:33394200-33419600	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr7:33394400-33427800	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr7:33395000-33407400	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr7:33395400-33405000	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr7:33396600-33420000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr7:33396600-33422000	Weak transcription	Small Intestine	intestine

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