Variant report

Variant	rs1420159
Chromosome Location	chr7:33255507-33255508
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1008582	0.87[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap]
rs1009355	0.90[CHB][hapmap]
rs10250045	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs10257361	0.94[CHB][hapmap]
rs10268074	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.84[YRI][hapmap]
rs10279081	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1030029	0.86[CEU][hapmap];0.95[CHB][hapmap];0.94[YRI][hapmap]
rs10951383	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.84[YRI][hapmap]
rs12155105	1.00[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap]
rs12537278	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.84[YRI][hapmap]
rs12671191	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1345308	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs1362371	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs1419898	0.87[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap]
rs1420147	0.84[CEU][hapmap]
rs1420148	0.90[CHB][hapmap]
rs1420158	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs1548880	0.89[CHB][hapmap]
rs1592465	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap]
rs1894873	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs2024430	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.84[YRI][hapmap]
rs2392233	0.83[CHB][hapmap]
rs4720115	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs4723261	0.87[CEU][hapmap];0.94[CHB][hapmap]
rs4723272	0.90[CHB][hapmap]
rs6462467	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs6950434	0.87[CEU][hapmap];0.95[CHB][hapmap];0.95[YRI][hapmap]
rs6960483	0.90[CHB][hapmap]
rs6976311	0.92[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap]
rs721533	0.86[CEU][hapmap];0.95[CHB][hapmap];0.94[YRI][hapmap]
rs759396	0.90[CHB][hapmap]
rs764041	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap]
rs7778657	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs7779367	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs7780194	0.87[CEU][hapmap];0.94[CHB][hapmap];0.95[YRI][hapmap]
rs7783610	0.85[CEU][hapmap];0.94[CHB][hapmap]
rs7791710	0.87[CEU][hapmap];0.95[CHB][hapmap];0.95[YRI][hapmap]
rs964707	0.86[CEU][hapmap];0.95[CHB][hapmap]
rs986553	0.86[CEU][hapmap];0.94[CHB][hapmap];0.94[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029220	chr7:32921484-33262190	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
2	nsv830943	chr7:33167106-33352759	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv606610	chr7:33218763-33486316	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33249400-33257200	Weak transcription	Fetal Brain Male	brain
2	chr7:33250600-33260400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:33251400-33265400	Weak transcription	Gastric	stomach
4	chr7:33252000-33262000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr7:33252400-33261600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr7:33252400-33263200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr7:33252800-33255600	Weak transcription	Brain Anterior Caudate	brain
8	chr7:33252800-33266400	Weak transcription	Left Ventricle	heart
9	chr7:33253000-33255800	Weak transcription	Brain Hippocampus Middle	brain
10	chr7:33253600-33257200	Weak transcription	Stomach Smooth Muscle	stomach
11	chr7:33253600-33263400	Weak transcription	Primary T cells from cord blood	blood
12	chr7:33253800-33262000	Weak transcription	Aorta	Aorta
13	chr7:33254000-33257200	Weak transcription	Fetal Stomach	stomach
14	chr7:33254000-33260600	Weak transcription	Pancreas	Pancrea
15	chr7:33254000-33262000	Weak transcription	Ovary	ovary
16	chr7:33254200-33256000	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr7:33254400-33257200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr7:33254800-33258400	Enhancers	HepG2	liver

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