Variant report

Variant	rs7780194
Chromosome Location	chr7:33208032-33208033
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs1008582	0.80[CHB][hapmap]
rs1009355	0.95[CHB][hapmap]
rs1019300	0.87[EUR][1000 genomes]
rs10228439	0.87[EUR][1000 genomes]
rs10233296	0.83[EUR][1000 genomes]
rs10250045	0.88[CEU][hapmap];0.90[CHB][hapmap];0.82[YRI][hapmap];0.83[EUR][1000 genomes]
rs10257361	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs10268074	0.88[CEU][hapmap];0.90[CHB][hapmap];0.86[GIH][hapmap];0.85[YRI][hapmap];0.83[EUR][1000 genomes]
rs10270013	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10278145	0.87[EUR][1000 genomes]
rs10279081	0.88[CEU][hapmap];0.90[CHB][hapmap];0.84[EUR][1000 genomes]
rs10279513	0.81[EUR][1000 genomes]
rs1030029	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.95[YRI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10951382	0.83[EUR][1000 genomes]
rs10951383	0.88[CEU][hapmap];0.90[CHB][hapmap];0.89[GIH][hapmap];0.85[YRI][hapmap];0.83[EUR][1000 genomes]
rs12155105	0.85[CEU][hapmap];0.86[CHB][hapmap];0.83[YRI][hapmap];0.83[EUR][1000 genomes]
rs12537278	0.88[CEU][hapmap];0.90[CHB][hapmap];0.89[GIH][hapmap];0.85[YRI][hapmap];0.83[EUR][1000 genomes]
rs12537836	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12671191	0.88[CEU][hapmap];0.90[CHB][hapmap];0.83[EUR][1000 genomes]
rs1345307	0.83[EUR][1000 genomes]
rs1345308	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[YRI][hapmap];0.87[EUR][1000 genomes]
rs1362371	0.95[CHB][hapmap];0.95[YRI][hapmap];0.87[EUR][1000 genomes]
rs1420147	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1420148	0.95[CHB][hapmap]
rs1420155	0.86[EUR][1000 genomes]
rs1420158	0.87[CEU][hapmap];0.95[CHB][hapmap];0.87[EUR][1000 genomes]
rs1420159	0.87[CEU][hapmap];0.94[CHB][hapmap];0.95[YRI][hapmap]
rs1548880	0.95[CHB][hapmap];0.81[ASN][1000 genomes]
rs1592465	0.88[CEU][hapmap];0.84[CHB][hapmap];0.89[GIH][hapmap];0.84[YRI][hapmap];0.83[EUR][1000 genomes]
rs1592466	0.87[EUR][1000 genomes]
rs1592467	0.87[EUR][1000 genomes]
rs1819826	0.82[EUR][1000 genomes]
rs1894873	0.88[CEU][hapmap];0.95[CHB][hapmap];0.89[GIH][hapmap];0.83[MKK][hapmap];0.95[YRI][hapmap];0.87[EUR][1000 genomes]
rs1969575	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2024430	0.88[CEU][hapmap];0.90[CHB][hapmap];0.89[GIH][hapmap];0.85[YRI][hapmap];0.82[EUR][1000 genomes]
rs2392230	0.87[EUR][1000 genomes]
rs4720109	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4720115	0.88[CEU][hapmap];0.95[CHB][hapmap];0.89[GIH][hapmap];0.83[MKK][hapmap];0.95[YRI][hapmap];0.87[EUR][1000 genomes]
rs4723261	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4723265	0.82[ASN][1000 genomes]
rs4723272	0.95[CHB][hapmap]
rs5012441	0.82[EUR][1000 genomes]
rs6462463	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6462464	0.87[EUR][1000 genomes]
rs6462467	0.90[CHB][hapmap]
rs6944623	0.83[EUR][1000 genomes]
rs6950434	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6960483	0.95[CHB][hapmap]
rs6976311	0.80[CHB][hapmap]
rs721533	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[GIH][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.95[YRI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs759396	0.95[CHB][hapmap]
rs764041	0.88[CEU][hapmap];0.89[CHB][hapmap];0.82[YRI][hapmap];0.83[EUR][1000 genomes]
rs7776834	0.81[ASN][1000 genomes]
rs7778657	0.88[CEU][hapmap];0.90[CHB][hapmap];0.81[YRI][hapmap];0.84[EUR][1000 genomes]
rs7778892	0.83[EUR][1000 genomes]
rs7779367	0.87[CEU][hapmap];0.90[CHB][hapmap];0.81[YRI][hapmap]
rs7783610	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7789344	0.87[EUR][1000 genomes]
rs7791710	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7803065	0.83[EUR][1000 genomes]
rs7806637	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7809540	0.88[EUR][1000 genomes]
rs964707	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[GIH][hapmap];0.89[MEX][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs986553	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[GIH][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.95[YRI][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029220	chr7:32921484-33262190	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
2	nsv830942	chr7:33048075-33246735	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv830943	chr7:33167106-33352759	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv933792	chr7:33169693-33216984	ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33182400-33210200	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr7:33184800-33217200	Weak transcription	Brain Hippocampus Middle	brain
3	chr7:33185400-33218000	Weak transcription	Brain Angular Gyrus	brain
4	chr7:33185600-33224000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr7:33190000-33217600	Weak transcription	Left Ventricle	heart
6	chr7:33190200-33230400	Weak transcription	Gastric	stomach
7	chr7:33195200-33220200	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr7:33196800-33217200	Weak transcription	Brain Substantia Nigra	brain
9	chr7:33197000-33222200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr7:33197200-33220400	Weak transcription	Brain Anterior Caudate	brain
11	chr7:33198000-33213800	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr7:33198400-33217600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr7:33200200-33217600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr7:33201200-33210000	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr7:33202400-33219800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr7:33203800-33221200	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr7:33204400-33217600	Weak transcription	Brain Cingulate Gyrus	brain
18	chr7:33205200-33213800	Weak transcription	Psoas Muscle	Psoas
19	chr7:33206200-33225400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr7:33206400-33209000	Weak transcription	Primary B cells from peripheral blood	blood
21	chr7:33206400-33213800	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr7:33206400-33217600	Weak transcription	Thymus	Thymus
23	chr7:33206400-33220200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr7:33206400-33221200	Weak transcription	Colonic Mucosa	Colon
25	chr7:33206400-33230400	Weak transcription	Right Ventricle	heart
26	chr7:33206600-33208400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr7:33206600-33211600	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr7:33206600-33215000	Weak transcription	Aorta	Aorta
29	chr7:33206600-33217200	Weak transcription	Adipose Nuclei	Adipose
30	chr7:33206600-33217400	Weak transcription	Colon Smooth Muscle	Colon
31	chr7:33206600-33217600	Weak transcription	Esophagus	oesophagus
32	chr7:33206600-33217600	Weak transcription	Ovary	ovary
33	chr7:33206600-33217600	Weak transcription	Spleen	Spleen
34	chr7:33206600-33217800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr7:33206600-33222600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr7:33206600-33230400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr7:33206600-33232600	Weak transcription	Pancreas	Pancrea
38	chr7:33206600-33234800	Weak transcription	Rectal Smooth Muscle	rectum
39	chr7:33206800-33209000	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr7:33206800-33212000	Weak transcription	Primary T cells from cord blood	blood
41	chr7:33206800-33213400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr7:33206800-33213400	Weak transcription	Liver	Liver
43	chr7:33206800-33222400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr7:33206800-33230400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr7:33207400-33211600	Weak transcription	Fetal Stomach	stomach

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