Variant report

Variant	rs1969575
Chromosome Location	chr7:33186082-33186083
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:33179137..33181368-chr7:33185643..33187342,2	MCF-7	breast:
2	chr7:33179229..33183198-chr7:33185335..33188130,3	K562	blood:
3	chr7:33183803..33185518-chr7:33185914..33189355,3	MCF-7	breast:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs1019300	0.89[EUR][1000 genomes]
rs10228439	0.89[EUR][1000 genomes]
rs10233296	0.85[EUR][1000 genomes]
rs10250045	0.85[EUR][1000 genomes]
rs10268074	0.85[EUR][1000 genomes]
rs10270013	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10278145	0.89[EUR][1000 genomes]
rs10279081	0.82[EUR][1000 genomes]
rs10279513	0.82[EUR][1000 genomes]
rs1030029	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10951382	0.84[EUR][1000 genomes]
rs10951383	0.85[EUR][1000 genomes]
rs12155105	0.85[EUR][1000 genomes]
rs12537278	0.85[EUR][1000 genomes]
rs12537836	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12671191	0.85[EUR][1000 genomes]
rs1345307	0.85[EUR][1000 genomes]
rs1345308	0.89[EUR][1000 genomes]
rs1362371	0.89[EUR][1000 genomes]
rs1420147	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1420155	0.87[EUR][1000 genomes]
rs1420158	0.89[EUR][1000 genomes]
rs1548880	0.82[ASN][1000 genomes]
rs1592465	0.85[EUR][1000 genomes]
rs1592466	0.89[EUR][1000 genomes]
rs1592467	0.89[EUR][1000 genomes]
rs1819826	0.84[EUR][1000 genomes]
rs1894873	0.89[EUR][1000 genomes]
rs2024430	0.84[EUR][1000 genomes]
rs2392230	0.89[EUR][1000 genomes]
rs4720109	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4720115	0.89[EUR][1000 genomes]
rs4723261	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4723265	0.81[ASN][1000 genomes]
rs5012441	0.84[EUR][1000 genomes]
rs6462463	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6462464	0.89[EUR][1000 genomes]
rs6944623	0.84[EUR][1000 genomes]
rs6950434	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6960483	0.80[ASN][1000 genomes]
rs721533	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs764041	0.85[EUR][1000 genomes]
rs7776834	0.82[ASN][1000 genomes]
rs7778657	0.85[EUR][1000 genomes]
rs7778892	0.85[EUR][1000 genomes]
rs7780194	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7783610	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7789344	0.89[EUR][1000 genomes]
rs7791710	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7803065	0.85[EUR][1000 genomes]
rs7806637	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7809540	0.90[EUR][1000 genomes]
rs964707	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs986553	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029220	chr7:32921484-33262190	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
2	nsv830942	chr7:33048075-33246735	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv869720	chr7:33127192-33193580	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1027807	chr7:33130675-33190591	Genic enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv464422	chr7:33131729-33187279	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv606606	chr7:33131729-33187279	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv606607	chr7:33131729-33192502	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv464423	chr7:33131729-33192800	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
9	nsv606608	chr7:33131729-33192800	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
10	nsv520406	chr7:33131729-33192837	Enhancers Strong transcription Active TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
11	nsv606609	chr7:33131729-33196354	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
12	nsv830943	chr7:33167106-33352759	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
13	nsv933792	chr7:33169693-33216984	ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
14	nsv532119	chr7:33169715-33186579	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33170200-33188400	Weak transcription	Psoas Muscle	Psoas
2	chr7:33170200-33205800	Weak transcription	Aorta	Aorta
3	chr7:33171200-33196200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr7:33171200-33205800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr7:33171200-33206600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr7:33176400-33206000	Weak transcription	Liver	Liver
7	chr7:33177200-33193200	Weak transcription	Ovary	ovary
8	chr7:33179600-33195000	Weak transcription	Fetal Brain Male	brain
9	chr7:33182400-33191600	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr7:33182400-33193200	Weak transcription	Primary T cells from cord blood	blood
11	chr7:33182400-33210200	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr7:33182800-33205600	Weak transcription	Primary hematopoietic stem cells	blood
13	chr7:33184600-33205800	Weak transcription	Fetal Lung	lung
14	chr7:33184800-33217200	Weak transcription	Brain Hippocampus Middle	brain
15	chr7:33185000-33205800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr7:33185200-33196200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr7:33185400-33186800	Weak transcription	Brain Cingulate Gyrus	brain
18	chr7:33185400-33187200	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr7:33185400-33189200	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr7:33185400-33196400	Weak transcription	Brain Substantia Nigra	brain
21	chr7:33185400-33196800	Weak transcription	Brain Anterior Caudate	brain
22	chr7:33185400-33218000	Weak transcription	Brain Angular Gyrus	brain
23	chr7:33185600-33205600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr7:33185600-33224000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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