Variant report

Variant	rs759396
Chromosome Location	chr7:33226966-33226967
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:33224744..33227531-chr7:33229527..33231156,2	K562	blood:
2	chr7:33224744..33228156-chr7:33229527..33231169,3	K562	blood:
3	chr7:33198767..33201643-chr7:33226484..33228700,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1009355	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10230133	0.81[CHB][hapmap]
rs10250045	0.86[CHB][hapmap]
rs10257361	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10268074	0.86[CHB][hapmap]
rs10279081	0.86[CHB][hapmap]
rs1030029	0.95[CHB][hapmap]
rs10951383	0.86[CHB][hapmap]
rs11763098	0.87[ASN][1000 genomes]
rs12155105	0.82[CHB][hapmap]
rs12537278	0.86[CHB][hapmap]
rs12666022	0.85[ASN][1000 genomes]
rs12671191	0.86[CHB][hapmap]
rs1345308	0.91[CHB][hapmap]
rs1362368	0.86[JPT][hapmap]
rs1362371	0.91[CHB][hapmap]
rs1420148	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1420158	0.91[CHB][hapmap]
rs1420159	0.90[CHB][hapmap]
rs1548880	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1592465	0.81[CHB][hapmap]
rs1894873	0.90[CHB][hapmap]
rs2006387	0.85[AFR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2024430	0.86[CHB][hapmap]
rs4720115	0.90[CHB][hapmap]
rs4723261	0.95[CHB][hapmap]
rs4723263	0.90[JPT][hapmap]
rs4723265	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4723272	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4723273	0.93[AFR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6462467	0.86[CHB][hapmap]
rs6950434	0.95[CHB][hapmap]
rs6960483	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6968400	0.84[ASN][1000 genomes]
rs721533	0.95[CHB][hapmap]
rs764041	0.84[CHB][hapmap]
rs7776834	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7778657	0.86[CHB][hapmap]
rs7779367	0.86[CHB][hapmap]
rs7780194	0.95[CHB][hapmap]
rs7781187	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7783610	0.95[CHB][hapmap];0.84[JPT][hapmap]
rs7791710	0.95[CHB][hapmap]
rs7793759	0.88[AFR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7802888	0.81[CHB][hapmap]
rs964707	0.95[CHB][hapmap]
rs986553	0.95[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029220	chr7:32921484-33262190	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
2	nsv830942	chr7:33048075-33246735	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv830943	chr7:33167106-33352759	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv606610	chr7:33218763-33486316	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33190200-33230400	Weak transcription	Gastric	stomach
2	chr7:33206400-33230400	Weak transcription	Right Ventricle	heart
3	chr7:33206600-33230400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr7:33206600-33232600	Weak transcription	Pancreas	Pancrea
5	chr7:33206600-33234800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr7:33206800-33230400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr7:33210800-33230200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr7:33213400-33230600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr7:33214000-33230400	Weak transcription	Liver	Liver
10	chr7:33217000-33239200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr7:33217800-33231000	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr7:33217800-33252400	Weak transcription	Aorta	Aorta
13	chr7:33218200-33230200	Weak transcription	Adipose Nuclei	Adipose
14	chr7:33218200-33235000	Weak transcription	Brain Cingulate Gyrus	brain
15	chr7:33218200-33252200	Weak transcription	Left Ventricle	heart
16	chr7:33219000-33230000	Weak transcription	Primary hematopoietic stem cells	blood
17	chr7:33219200-33230200	Weak transcription	Primary B cells from peripheral blood	blood
18	chr7:33219800-33230000	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr7:33220600-33230400	Weak transcription	Fetal Intestine Large	intestine
20	chr7:33220600-33237000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr7:33220800-33228200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr7:33220800-33230000	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr7:33220800-33230200	Weak transcription	Primary T cells from cord blood	blood
24	chr7:33220800-33230400	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr7:33220800-33230600	Weak transcription	Fetal Intestine Small	intestine
26	chr7:33220800-33230600	Weak transcription	Spleen	Spleen
27	chr7:33221000-33230400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr7:33221000-33230400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr7:33221000-33231000	Weak transcription	Esophagus	oesophagus
30	chr7:33221000-33236200	Weak transcription	Brain Anterior Caudate	brain
31	chr7:33221000-33236400	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr7:33223800-33231000	Weak transcription	Ovary	ovary
33	chr7:33226000-33230600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr7:33226200-33230600	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr7:33226400-33233200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr7:33226400-33234400	Weak transcription	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links