Variant report

Variant	rs7779367
Chromosome Location	chr7:33295750-33295751
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:33283153..33284693-chr7:33295167..33297777,2	K562	blood:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1008582	0.82[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs1009355	0.86[CHB][hapmap]
rs10225698	0.82[JPT][hapmap]
rs10230133	0.84[CHB][hapmap]
rs10250045	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10257361	0.94[CHB][hapmap]
rs10268074	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10279081	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1030029	0.87[CEU][hapmap];0.90[CHB][hapmap];0.89[YRI][hapmap]
rs10951383	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11972278	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs12155105	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12537278	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12665869	0.82[JPT][hapmap]
rs12669595	0.82[JPT][hapmap]
rs12671191	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1345277	0.82[JPT][hapmap]
rs1345308	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap]
rs1362231	0.82[CEU][hapmap]
rs1362371	0.95[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap]
rs1419898	0.82[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs1419925	0.81[JPT][hapmap]
rs1419927	0.81[JPT][hapmap]
rs1419928	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs1420147	0.85[CEU][hapmap]
rs1420148	0.86[CHB][hapmap]
rs1420158	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap]
rs1420159	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1548880	0.86[CHB][hapmap]
rs1592465	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1894873	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap]
rs2024430	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2041419	0.82[JPT][hapmap]
rs2392233	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs4720115	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap]
rs4720118	0.81[JPT][hapmap]
rs4723261	0.87[CEU][hapmap];0.89[CHB][hapmap]
rs4723272	0.86[CHB][hapmap]
rs4723285	0.80[JPT][hapmap]
rs4723288	0.81[JPT][hapmap]
rs6462467	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6462477	0.81[JPT][hapmap]
rs6950434	0.87[CEU][hapmap];0.91[CHB][hapmap];0.85[YRI][hapmap]
rs6960483	0.86[CHB][hapmap]
rs6976311	0.85[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs721533	0.87[CEU][hapmap];0.90[CHB][hapmap];0.89[YRI][hapmap]
rs758779	0.81[JPT][hapmap]
rs758780	0.81[JPT][hapmap]
rs759396	0.86[CHB][hapmap]
rs764041	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7778657	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7780194	0.87[CEU][hapmap];0.90[CHB][hapmap];0.81[YRI][hapmap]
rs7783610	0.85[CEU][hapmap];0.90[CHB][hapmap]
rs7791710	0.87[CEU][hapmap];0.91[CHB][hapmap];0.85[YRI][hapmap]
rs7802888	0.84[CHB][hapmap];0.82[JPT][hapmap]
rs7805192	0.82[JPT][hapmap]
rs964707	0.87[CEU][hapmap];0.90[CHB][hapmap]
rs975791	0.81[JPT][hapmap]
rs986553	0.87[CEU][hapmap];0.90[CHB][hapmap];0.89[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830943	chr7:33167106-33352759	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
2	nsv606610	chr7:33218763-33486316	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv916660	chr7:33272493-33506384	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33283800-33316000	Weak transcription	Ovary	ovary
2	chr7:33287200-33296000	Weak transcription	Pancreas	Pancrea
3	chr7:33288800-33317600	Weak transcription	Gastric	stomach
4	chr7:33289400-33309000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr7:33289600-33310800	Weak transcription	Psoas Muscle	Psoas
6	chr7:33290000-33316200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr7:33290800-33295800	Weak transcription	Fetal Lung	lung
8	chr7:33290800-33309000	Weak transcription	Fetal Stomach	stomach
9	chr7:33290800-33316400	Weak transcription	Aorta	Aorta
10	chr7:33291200-33297600	Weak transcription	Osteobl	bone
11	chr7:33291200-33297800	Weak transcription	Colon Smooth Muscle	Colon
12	chr7:33291200-33298000	Weak transcription	NHDF-Ad	bronchial
13	chr7:33291200-33316000	Weak transcription	Primary T cells from cord blood	blood
14	chr7:33291600-33305200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr7:33291800-33307600	Weak transcription	Left Ventricle	heart
16	chr7:33293400-33302200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr7:33295400-33299800	Weak transcription	HepG2	liver

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