Variant report

Variant	rs1419925
Chromosome Location	chr7:33481519-33481520
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1008582	0.89[CHB][hapmap]
rs10225698	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10230133	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap]
rs11972278	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs12665869	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12669595	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13241465	0.94[CHB][hapmap]
rs1345277	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1362228	0.94[CHB][hapmap]
rs1362230	0.94[CHB][hapmap]
rs1419898	0.88[CHB][hapmap]
rs1419916	0.94[CHB][hapmap]
rs1419918	0.94[CHB][hapmap]
rs1419919	0.94[CHB][hapmap]
rs1419921	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1419927	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1419928	0.91[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2041419	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2392233	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs3884597	0.88[CEU][hapmap]
rs4141012	0.94[CHB][hapmap]
rs4236337	0.94[CHB][hapmap]
rs4509212	0.94[CHB][hapmap]
rs4510745	0.94[CHB][hapmap]
rs4637716	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs4720118	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4723285	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs4723288	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6462477	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6462479	0.94[CHB][hapmap]
rs6964756	0.83[CHB][hapmap];0.90[JPT][hapmap]
rs6976311	0.89[CHB][hapmap]
rs6977009	0.94[CHB][hapmap];0.95[JPT][hapmap]
rs723300	0.83[CHB][hapmap];0.90[JPT][hapmap]
rs758779	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs758780	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs764041	0.80[JPT][hapmap]
rs7779367	0.81[JPT][hapmap]
rs7802888	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs7805192	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs975791	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs9784973	0.88[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606610	chr7:33218763-33486316	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv916660	chr7:33272493-33506384	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv830944	chr7:33389892-33549882	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv934287	chr7:33470390-33512880	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv933237	chr7:33470390-33574046	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv1792576	chr7:33476376-33482084	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33475400-33516000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:33477600-33483600	Weak transcription	Psoas Muscle	Psoas
3	chr7:33478400-33481800	Weak transcription	Fetal Lung	lung

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